Evidence map›Paper›PMID 27344340›Full record

ArticlePlant cell reports2016

Metabolite fingerprinting, pathway analyses, and bioactivity correlations for plant species belonging to the Cornaceae, Fabaceae, and Rosaceae families.

Su Young Son, Na Kyung Kim, Sunmin Lee, Digar Singh, Ga Ryun Kim, Jong Seok Lee, Hee-Sun Yang, Joohong Yeo, Sarah Lee, Choong Hwan Lee

Abstract read
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In one paragraph

Article in Plant cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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  7. Metabolite Profiling ofPlants (Basel, Switzerland) · 2021
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  16. Effects ofInternational journal of molecular sciences · 2018
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  18. Radical Scavenging and Antioxidant Activity ofMolecules (Basel, Switzerland) · 2018
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Su Young SonDepartment of Bioscience and Biotechnology, Konkuk University, Seoul, 05029, Korea.
Na Kyung KimDepartment of Bioscience and Biotechnology, Konkuk University, Seoul, 05029, Korea.
Sunmin LeeDepartment of Bioscience and Biotechnology, Konkuk University, Seoul, 05029, Korea.
Digar SinghDepartment of Bioscience and Biotechnology, Konkuk University, Seoul, 05029, Korea.
Ga Ryun KimNational Institute of Biological Resources, Environmental Research Complex, Inchon, 22689, Korea.
Jong Seok LeeNational Institute of Biological Resources, Environmental Research Complex, Inchon, 22689, Korea.
Hee-Sun YangNational Institute of Biological Resources, Environmental Research Complex, Inchon, 22689, Korea.
Joohong YeoNational Institute of Biological Resources, Environmental Research Complex, Inchon, 22689, Korea.
Sarah LeeNational Institute of Biological Resources, Environmental Research Complex, Inchon, 22689, Korea. lsr57@korea.kr.
Choong Hwan LeeDepartment of Bioscience and Biotechnology, Konkuk University, Seoul, 05029, Korea. chlee123@konkuk.ac.kr.
Konkuk University · KRNational Institute of Biological Resources · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageA multi-parallel approach gauging the mass spectrometry-based metabolite fingerprinting coupled with bioactivity and pathway evaluations could serve as an efficacious tool for inferring plant taxonomic orders. Thirty-four species from three plant families, namely Cornaceae (7), Fabaceae (9), and Rosaceae (18) were subjected to metabolite profiling using gas chromatography-time-of-flight-mass spectrometry (GC-TOF-MS) and ultrahigh performance liquid chromatography-linear trap quadrupole-ion trap-mass spectrometry (UHPLC-LTQ-IT-MS/MS), followed by multivariate analyses to determine the metabolites characteristic of these families. The partial least squares discriminant analysis (PLS-DA) revealed the distinct clustering pattern of metabolites for each family. The pathway analysis further highlighted the relatively higher proportions of flavonols and ellagitannins in the Cornaceae family than in the other two families. Higher levels of phenolic acids and flavan-3-ols were observed among species from the Rosaceae family, while amino acids, flavones, and isoflavones were more abundant among the Fabaceae family members. The antioxidant activities of plant extracts were measured using ABTS, DPPH, and FRAP assays, and indicated that extracts from the Rosaceae family had the highest activity, followed by those from Cornaceae and Fabaceae. The correlation map analysis positively links the proportional concentration of metabolites with their relative antioxidant activities, particularly in Cornaceae and Rosaceae. This work highlights the pre-eminence of the multi-parallel approach involving metabolite profiling and bioactivity evaluations coupled with metabolic pathways as an efficient methodology for the evaluation of plant phylogenies.

Indexed as

Metabolic Networks and PathwaysAntioxidantsCornaceaeDiscriminant AnalysisFabaceaeLeast-Squares AnalysisMetabolomeMetabolomicsRosaceaeSecondary MetabolismSpecies SpecificityAntioxidantsBioactivityMass spectrometryMetabolite fingerprintingPathwaysPlant families

Identifiers

PMID27344340
OpenAlexW2473322337

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.