Evidence map›Paper›PMID 27344170›Full record

ArticleOncotarget2016

Transcriptome sequencing of neurologic diseases associated genes in HHV-6A infected human astrocyte.

Qing Shao, Zhe Lin, Xiaohui Wu, Junwei Tang, Shuai Lu, Dongju Feng, Ci Cheng, Lanqun Qing, Kun Yao, Yun Chen

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Multidimensional mechanisms of SFTSV-host interactions: viral protein functions, mFrontiers in cellular and infection microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Qing ShaoDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Zhe LinDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Xiaohui WuGenetic Data Analysis Group, Shanghai Biotechnology Corporation, Shanghai, People's Republic of China.
Junwei TangLiver Transplantation Center of The First Affiliated Hospital and Collaborative Innovation Center For Cancer Personalized Medicine, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Shuai LuDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Dongju FengDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Ci ChengDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Lanqun QingDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Kun YaoDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Yun ChenDepartment of Immunology, Nanjing Medical University, Nanjing, Jiangsu Province, People's Republic of China.
Nanjing Medical University · CNShanghai CASB Biotechnology (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human Herpesvirus 6 (HHV-6) has been involved in the development of several central nervous system (CNS) diseases, such as Alzheimer's disease, multiple sclerosis and glioma. In order to identify the pathogenic mechanism of HHV-6A infection, we carried out mRNA-seq study of human astrocyte HA1800 cell with HHV-6A GS infection. Using mRNA-seq analysis of HA1800-control cells with HA1800-HHV-6A GS cells, we identified 249 differentially expressed genes. After investigating these candidate genes, we found seven genes associated with two or more CNS diseases: CTSS, PTX3, CHI3L1, Mx1, CXCL16, BIRC3, and BST2. This is the first transcriptome sequencing study which showed the significant association of these genes between HHV-6A infection and neurologic diseases. We believe that our findings can provide a new perspective to understand the pathogenic mechanism of HHV-6A infection and neurologic diseases.

Indexed as

AstrocytesCell Culture TechniquesHerpesvirus 6, HumanHumansNervous System DiseasesRoseolovirus InfectionsTranscriptomeastrocyteHHV-6neurologic diseasestranscriptome sequencing study

Identifiers

PMID27344170
PMCPMC5217001
OpenAlexW2439445924

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.