Evidence map›Paper›PMID 27342747›Full record

ArticleProtein science : a publication of the Protein Society2016

Intrinsic local destabilization of the C-terminus predisposes integrin α1 I domain to a conformational switch induced by collagen binding.

Ana Monica Nunes, Jie Zhu, Jacqueline Jezioro, Conceição A S A Minetti, David P Remeta, Richard W Farndale, Samir W Hamaia, Jean Baum

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ana Monica NunesDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, 08854.
Jie ZhuDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, 08854.
Jacqueline JezioroDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, 08854.
Conceição A S A MinettiDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, 08854.
David P RemetaDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, 08854.
Richard W FarndaleDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, United Kingdom.
Samir W HamaiaDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, United Kingdom.
Jean BaumDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, 08854.
Environmental and Occupational Health Sciences Institute · USRutgers, The State University of New Jersey · USUniversity of Cambridge · GB

Funding

NMR STUDIES OF TRIPLE HELICAL PEPTIDESR01GM045302 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BAUM, JEAN S · 1996 to 2019
$4.5M
British Heart Foundation RG/09/003/27122British Heart Foundation RG/15/4/31268NIGMS NIH HHS R01 GM045302Wellcome Trust 094470/Z/10/Z
6 · The paper itself

Abstract

Integrin-collagen interactions play a critical role in a myriad of cellular functions that include immune response, and cell development and differentiation, yet their mechanism of binding is poorly understood. There is increasing evidence that conformational flexibility assumes a central role in the molecular mechanisms of protein-protein interactions and here we employ NMR hydrogen-deuterium exchange (HDX) experiments to explore the impact of slower timescale dynamic events. To gain insight into the mechanisms underlying collagen-induced conformational switches, we have undertaken a comparative study between the wild type integrin α1 I and a gain-of-function E317A mutant. NMR HDX results suggest a relationship between regions exhibiting a reduced local stability in the unbound I domain and those that undergo significant conformational changes upon binding. Specifically, the αC and α7 helices within the C-terminus are at the center of such major perturbations and present reduced local stabilities in the unbound state relative to other structural elements. Complementary isothermal titration calorimetry experiments have been performed to derive complete thermodynamic binding profiles for association of the collagen-like triple-helical peptide with wild type α1 I and E317A mutant. The differential energetics observed for E317A are consistent with the HDX experiments and support a model in which intrinsically destabilized regions predispose conformational rearrangement in the integrin I domain. This study highlights the importance of exploring different timescales to delineate allosteric and binding events.

Indexed as

Amino Acid SubstitutionCollagenHumansIntegrin alpha1Mutation, MissenseNuclear Magnetic Resonance, BiomolecularProtein DomainsProtein StabilityProtein Structure, SecondaryCollagenIntegrin alpha1alpha1 I domainbinding energeticscollagenconformational switchdynamicshydrogen-deuterium exchangeintegrinNMR

Identifiers

PMID27342747
PMCPMC5338244
OpenAlexW2469342451

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.