Evidence map›Paper›PMID 27342309›Full record

ArticlePlant physiology2016

SUPPRESSOR OF PHYTOCHROME B4-#3 Represses Genes Associated with Auxin Signaling to Modulate Hypocotyl Growth.

David S Favero, Caitlin N Jacques, Akira Iwase, Kimberly Ngan Le, Jianfei Zhao, Keiko Sugimoto, Michael M Neff

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

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  14. Phosphoproteomics ofProceedings of the National Academy of Sciences of the United States of America · 2019
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

David S FaveroMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.).ORCID 0000-0002-6879-0323
Caitlin N JacquesMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.).ORCID 0000-0002-7259-4237
Akira IwaseMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.).
Kimberly Ngan LeMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.).ORCID 0000-0002-1053-6445
Jianfei ZhaoMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.).ORCID 0000-0002-7684-9575
Keiko SugimotoMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.).ORCID 0000-0002-9209-8230
Michael M NeffMolecular Plant Sciences Graduate Program (D.S.F., C.N.J., K.N.L., J.Z., M.M.N.) and Department of Crop and Soil Sciences (D.S.F., C.N.J., J.Z., M.M.N.), Washington State University, Pullman, Washington 99164; andRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama, Kanagawa 230-0045, Japan (A.I., K.S.) mmneff@wsu.edu.ORCID 0000-0003-2170-5555
RIKEN Center for Sustainable Resource Science · JPWashington State University · US

Funding

TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
NIGMS NIH HHS T32 GM008336
6 · The paper itself

Abstract

Developing seedlings are well equipped to alter their growth in response to external factors in order to maximize their chances of survival. SUPPRESSOR OF PHYTOCHROME B4-#3 (SOB3) and other members of the AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family of transcription factors modulate the development of Arabidopsis (Arabidopsis thaliana) by repressing hypocotyl elongation in young seedlings growing in light. However, the molecular mechanism behind how AHLs influence seedling development is largely unknown. We have identified genes associated with auxin-mediated hypocotyl elongation as downstream targets of SOB3. We found that YUCCA8 (YUC8) as well as members of the SMALL AUXIN UP-REGULATED RNA19 (SAUR19) subfamily were down-regulated in the short-hypocotyl, gain-of-function SOB3-D mutant and up-regulated in the dominant-negative, tall-hypocotyl sob3-6 mutant. SOB3-D and sob3-6 hypocotyls also exhibited altered sensitivity to the polar auxin transport inhibitor N-1-napthylphthalamic acid, suggesting a critical connection between auxin and the modulation of seedling elongation by SOB3 Finally, we found that overexpression of GREEN FLUORESCENT PROTEIN-SAUR19 in the SOB3-D line partially rescued defects in hypocotyl elongation, and SOB3 bound directly to the promoters of YUC8 and SAUR19 subfamily members. Taken together, these data indicate that SOB3 modulates hypocotyl elongation in young seedlings by directly repressing the transcription of genes associated with auxin signaling.

Indexed as

Genes, PlantSignal TransductionArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGene Expression Regulation, PlantGreen Fluorescent ProteinsHypocotylIndoleacetic AcidsModels, BiologicalMutationPhenotypePromoter Regions, GeneticProtein BindingRepressor ProteinsTemperatureArabidopsis ProteinsDNA-Binding ProteinsGreen Fluorescent ProteinsIndoleacetic AcidsRepressor ProteinsSOB3 protein, Arabidopsis

Identifiers

PMID27342309
PMCPMC4972272
OpenAlexW2467367116

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.