Evidence map›Paper›PMID 27340512›Full record

ArticleStandards in genomic sciences2016

Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)).

Trent A Key, Dray P Richmond, Kimberly S Bowman, Yong-Joon Cho, Jongsik Chun, Milton S da Costa, Fred A Rainey, William M Moe

Abstract readCase Reports
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Comparative genomics revealsApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Dehalogenation of Chlorinated Ethenes to Ethene by a Novel Isolate, "Applied and environmental microbiology · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Trent A KeyLouisiana State University, Baton Rouge, LA USA.
Dray P RichmondLouisiana State University, Baton Rouge, LA USA.
Kimberly S BowmanLouisiana State University, Baton Rouge, LA USA.
Yong-Joon ChoChunLab, Inc., Seoul National University, Seoul, Republic of Korea.
Jongsik ChunChunLab, Inc., Seoul National University, Seoul, Republic of Korea.
Milton S da CostaDepartment of Life Sciences, University of Coimbra, Coimbra, Portugal.
Fred A RaineyUniversity of Alaska Anchorage, Anchorage, AK USA.
William M MoeLouisiana State University, Baton Rouge, LA USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dehalogenimonas alkenigignens IP3-3(T) is a strictly anaerobic, mesophilic, Gram negative staining bacterium that grows by organohalide respiration, coupling the oxidation of H2 to the reductive dehalogenation of polychlorinated alkanes. Growth has not been observed with any non-polyhalogenated alkane electron acceptors. Here we describe the features of strain IP3-3(T) together with genome sequence information and its annotation. The 1,849,792 bp high-quality-draft genome contains 1936 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small unit rRNA (16S) locus. The genome contains 29 predicted reductive dehalogenase genes, a large majority of which lack cognate genes encoding membrane anchoring proteins.

Indexed as

1,2,3-trichloropropane1,2-dichloroethane1,2-dichloropropaneChloroflexiDehalococcoidiaReductive dechlorination

Identifiers

PMID27340512
PMCPMC4918011

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.