Evidence map›Paper›PMID 27340511›Full record

ArticleStandards in genomic sciences2016

High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

Hukam Singh Gehlot, Julie Ardley, Nisha Tak, Rui Tian, Neetu Poonar, Raju R Meghwal, Sonam Rathi, Ravi Tiwari, Wan Adnawani, Rekha Seshadri and 10 more

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In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Hukam Singh GehlotBNF and Stress Biology Lab., Department of Botany, J.N. Vyas University, Jodhpur, 342001 India.
Julie ArdleyCentre for Studies, Murdoch University, Murdoch, Western Australia Australia.
Nisha TakBNF and Stress Biology Lab., Department of Botany, J.N. Vyas University, Jodhpur, 342001 India.
Rui TianCentre for Studies, Murdoch University, Murdoch, Western Australia Australia.
Neetu PoonarBNF and Stress Biology Lab., Department of Botany, J.N. Vyas University, Jodhpur, 342001 India.
Raju R MeghwalBNF and Stress Biology Lab., Department of Botany, J.N. Vyas University, Jodhpur, 342001 India.
Sonam RathiBNF and Stress Biology Lab., Department of Botany, J.N. Vyas University, Jodhpur, 342001 India.
Ravi TiwariCentre for Studies, Murdoch University, Murdoch, Western Australia Australia.
Wan AdnawaniCentre for Studies, Murdoch University, Murdoch, Western Australia Australia.
Rekha SeshadriDOE Joint Genome Institute, Walnut Creek, California USA.
T B K ReddyDOE Joint Genome Institute, Walnut Creek, California USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California USA.
Manoj PillayBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California USA.
Mohammed N BaeshenDepartment of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Ahmed M Al-HejinDepartment of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California USA ; Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Wayne ReeveCentre for Studies, Murdoch University, Murdoch, Western Australia Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ensifer sp. PC2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a nitrogen-fixing nodule of the tree legume P. cineraria (L.) Druce (Khejri), which is a keystone species that grows in arid and semi-arid regions of the Indian Thar desert. Strain PC2 exists as a dominant saprophyte in alkaline soils of Western Rajasthan. It is fast growing, well-adapted to arid conditions and is able to form an effective symbiosis with several annual crop legumes as well as species of mimosoid trees and shrubs. Here we describe the features of Ensifer sp. PC2, together with genome sequence information and its annotation. The 8,458,965 bp high-quality permanent draft genome is arranged into 171 scaffolds of 171 contigs containing 8,344 protein-coding genes and 139 RNA-only encoding genes, and is one of the rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal.

Indexed as

EnsiferNitrogen fixationProsopisRoot-nodule bacteriaSymbiosis

Identifiers

PMID27340511
PMCPMC4918122

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