Evidence map›Paper›PMID 27339364›Full record

ArticleScientific reports2016

De novo intrachromosomal gene conversion from OPN1MW to OPN1LW in the male germline results in Blue Cone Monochromacy.

Elena Buena-Atienza, Klaus Rüther, Britta Baumann, Richard Bergholz, David Birch, Elfride De Baere, Helene Dollfus, Marie T Greally, Peter Gustavsson, Christian P Hamel and 13 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 36 citations in OpenAlex.

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  14. The landscape of submicroscopic structural variants at theProceedings of the National Academy of Sciences of the United States of America · 2022
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  15. Gene Therapy inHuman gene therapy · 2022
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  16. NovelInternational journal of molecular sciences · 2022
    Article
  17. Insight fromGenes · 2022
    Article
  18. Achromatopsia: Genetics and Gene Therapy.Molecular diagnosis & therapy · 2022
    Review
  19. Article
  20. Disease mechanisms of X-linked cone dystrophy caused by missense mutations in the red and green cone opsins.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 15 institutions in 9 countries.

Elena Buena-AtienzaInstitute for Ophthalmic Research, Centre for Ophthalmology, Tuebingen, Germany.
Klaus RütherSankt Gertrauden-Krankenhaus, Berlin, Germany.
Britta BaumannInstitute for Ophthalmic Research, Centre for Ophthalmology, Tuebingen, Germany.
Richard BergholzDepartment of Ophthalmology, Charité - Universitätsmedizin Berlin, Campus Virchow-Klinikum, Berlin, Germany.
David BirchRetina Foundation of the Southwest, Tom and Dorothy Anderson Vision Research Center, Texas, USA.
Elfride De BaereDepartment of Ophthalmology &Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.
Helene DollfusCentre de Référence pour les Affections Rares en Génétique Ophtalmologique, Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
Marie T GreallyNational Centre for Medical Genetics, Our Lady's Children's Hospital, Dublin, Ireland.
Peter GustavssonDepartment of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden.
Christian P HamelGenetic Sensory Diseases - Hopital Gui de Chauliac, Centre Hospitalier Universitaire, Montpellier, France.
John R HeckenlivelyDepartment of Ophthalmology and Visual Sciences, W. K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI, USA.
Bart P LeroyDepartment of Ophthalmology &Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.
Astrid S PlompDepartment of Clinical Genetics, Academic Medical Center, Amsterdam, The Netherlands.
Jan Willem R PottDepartment of Ophthalmology, University Medical Centre Groningen, University of Groningen, The Netherlands.
Katherine RoseGenetic Health Services Victoria, Monash Medical Centre, Parkville, Australia.
Thomas RosenbergNational Eye Clinic for the Visually Impaired, Kennedy Center, Glostrup, Denmark.
Zornitza StarkVictorian Clinical Genetics Services, Murdoch Childrens Research Institute, Parkville, Victoria, Australia.
Joke B G M VerheijDepartment of Medical Genetics, University Medical Centre Groningen, University of Groningen, The Netherlands.
Richard WeleberDepartment of Ophthalmic Genetics, Casey Eye Institute, Portland, OR, USA.
Ditta ZoborInstitute for Ophthalmic Research, Centre for Ophthalmology, Tuebingen, Germany.
Nicole WeisschuhInstitute for Ophthalmic Research, Centre for Ophthalmology, Tuebingen, Germany.
Susanne KohlInstitute for Ophthalmic Research, Centre for Ophthalmology, Tuebingen, Germany.
Bernd WissingerInstitute for Ophthalmic Research, Centre for Ophthalmology, Tuebingen, Germany.
STZ eyetrial · DEGhent University Hospital · BEUniversity of Groningen · NLAcademic Medical Center · NLCharité - Universitätsmedizin Berlin · DEHôpital Gui de Chauliac · FRHôpitaux Universitaires de Strasbourg · FRKarolinska Institutet · SEKennedy Center · DKMonash Medical Centre · AUMurdoch Children's Research Institute · AUOur Lady's Hospital · IERetina Foundation of the Southwest · USSankt Gertrauden Krankenhaus · DEUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-linked cone dysfunction disorders such as Blue Cone Monochromacy and X-linked Cone Dystrophy are characterized by complete loss (of) or reduced L- and M- cone function due to defects in the OPN1LW/OPN1MW gene cluster. Here we investigated 24 affected males from 16 families with either a structurally intact gene cluster or at least one intact single (hybrid) gene but harbouring rare combinations of common SNPs in exon 3 in single or multiple OPN1LW and OPN1MW gene copies. We assessed twelve different OPN1LW/MW exon 3 haplotypes by semi-quantitative minigene splicing assay. Nine haplotypes resulted in aberrant splicing of ≥20% of transcripts including the known pathogenic haplotypes (i.e. 'LIAVA', 'LVAVA') with absent or minute amounts of correctly spliced transcripts, respectively. De novo formation of the 'LIAVA' haplotype derived from an ancestral less deleterious 'LIAVS' haplotype was observed in one family with strikingly different phenotypes among affected family members. We could establish intrachromosomal gene conversion in the male germline as underlying mechanism. Gene conversion in the OPN1LW/OPN1MW genes has been postulated, however, we are first to demonstrate a de novo gene conversion within the lineage of a pedigree.

Indexed as

Gene ConversionGerm-Line MutationColor Vision DefectsElectroretinographyExonsFemaleGenes, X-LinkedGenetic Diseases, X-LinkedHaplotypesHumansMaleMultigene FamilyPedigreePolymorphism, Single NucleotideRod Opsinslong-wavelength opsinmiddle-wavelength opsinRod Opsins

Identifiers

PMID27339364
PMCPMC4919619
OpenAlexW2462683545

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.