Evidence map›Paper›PMID 27339202›Full record

ArticleScientific reports2016

The rubber tree genome shows expansion of gene family associated with rubber biosynthesis.

Nyok-Sean Lau, Yuko Makita, Mika Kawashima, Todd D Taylor, Shinji Kondo, Ahmad Sofiman Othman, Alexander Chong Shu-Chien, Minami Matsui

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 148 citations in OpenAlex.

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  9. Genome-Wide Identification and Expression Analysis of theCurrent issues in molecular biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Nyok-Sean LauCentre for Chemical Biology, Universiti Sains Malaysia, 11900 Bayan Lepas, Penang, Malaysia.
Yuko MakitaSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Biomass Engineering Research Division, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.
Mika KawashimaSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Biomass Engineering Research Division, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.
Todd D TaylorLaboratory for Integrated Bioinformatics, RIKEN Center for Integrative Medical Sciences, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.
Shinji KondoTransdisciplinary Research Integration Center, National Institute of Polar Research, Tachikawa, Tokyo 190-8518, Japan.
Ahmad Sofiman OthmanCentre for Chemical Biology, Universiti Sains Malaysia, 11900 Bayan Lepas, Penang, Malaysia.
Alexander Chong Shu-ChienCentre for Chemical Biology, Universiti Sains Malaysia, 11900 Bayan Lepas, Penang, Malaysia.
Minami MatsuiSynthetic Genomics Research Group, RIKEN Center for Sustainable Resource Science, Biomass Engineering Research Division, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.
RIKEN Center for Sustainable Resource Science · JPUniversiti Sains Malaysia · MYNational Institute of Polar Research · JPRIKEN Center for Integrative Medical Sciences · JP

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
NCATS NIH HHS UL1 TR001863
6 · The paper itself

Abstract

Hevea brasiliensis Muell. Arg, a member of the family Euphorbiaceae, is the sole natural resource exploited for commercial production of high-quality natural rubber. The properties of natural rubber latex are almost irreplaceable by synthetic counterparts for many industrial applications. A paucity of knowledge on the molecular mechanisms of rubber biosynthesis in high yield traits still persists. Here we report the comprehensive genome-wide analysis of the widely planted H. brasiliensis clone, RRIM 600. The genome was assembled based on ~155-fold combined coverage with Illumina and PacBio sequence data and has a total length of 1.55 Gb with 72.5% comprising repetitive DNA sequences. A total of 84,440 high-confidence protein-coding genes were predicted. Comparative genomic analysis revealed strong synteny between H. brasiliensis and other Euphorbiaceae genomes. Our data suggest that H. brasiliensis's capacity to produce high levels of latex can be attributed to the expansion of rubber biosynthesis-related genes in its genome and the high expression of these genes in latex. Using cap analysis gene expression data, we illustrate the tissue-specific transcription profiles of rubber biosynthesis-related genes, revealing alternative means of transcriptional regulation. Our study adds to the understanding of H. brasiliensis biology and provides valuable genomic resources for future agronomic-related improvement of the rubber tree.

Indexed as

Genome, PlantGenomicsHeveaLatexPlant ProteinsRNA, PlantRubberSequence Analysis, RNATranscriptomeLatexPlant ProteinsRNA, PlantRubber

Identifiers

PMID27339202
PMCPMC5008842
OpenAlexW2468344097

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.