Evidence map›Paper›PMID 27339138›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Dynamics and mechanism of ultrafast water-protein interactions.

Yangzhong Qin, Lijuan Wang, Dongping Zhong

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 155 citations in OpenAlex.

  1. Metabolic Structure: A Paradigm Revisited in Light of the Fundamental Parameters of Living Systems.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
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  4. Hydraulic Activation of the AsLOV2 Photoreceptor.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Reactivity Tracking of an Enzyme Progress Coordinate.The journal of physical chemistry letters · 2023
    Article
  16. Article
  17. Temporal and spatial resolution of distal protein motions that activate hydrogen tunneling in soybean lipoxygenase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Terahertz spectra of proteinuria and non-proteinuria.Frontiers in bioengineering and biotechnology · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yangzhong QinDepartment of Physics, Department of Chemistry and Biochemistry, and Programs of Biophysics, Chemical Physics, and Biochemistry, The Ohio State University, Columbus, OH 43210.
Lijuan WangDepartment of Physics, Department of Chemistry and Biochemistry, and Programs of Biophysics, Chemical Physics, and Biochemistry, The Ohio State University, Columbus, OH 43210.
Dongping ZhongDepartment of Physics, Department of Chemistry and Biochemistry, and Programs of Biophysics, Chemical Physics, and Biochemistry, The Ohio State University, Columbus, OH 43210 zhong.28@osu.edu.
The Ohio State University · US

Funding

Ultrafast Biological Dynamics for Protein Properties and FunctionsR35GM118332 · NIGMS · OHIO STATE UNIVERSITY · PI ZHONG, DONGPING · 2016 to 2020
$2.1M
Dynamics and Mechanism of Water-Protein InteractionsR01GM095997 · NIGMS · OHIO STATE UNIVERSITY · PI ZHONG, DONGPING · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM095997NIGMS NIH HHS R35 GM118332
6 · The paper itself

Abstract

Protein hydration is essential to its structure, dynamics, and function, but water-protein interactions have not been directly observed in real time at physiological temperature to our awareness. By using a tryptophan scan with femtosecond spectroscopy, we simultaneously measured the hydration water dynamics and protein side-chain motions with temperature dependence. We observed the heterogeneous hydration dynamics around the global protein surface with two types of coupled motions, collective water/side-chain reorientation in a few picoseconds and cooperative water/side-chain restructuring in tens of picoseconds. The ultrafast dynamics in hundreds of femtoseconds is from the outer-layer, bulk-type mobile water molecules in the hydration shell. We also found that the hydration water dynamics are always faster than protein side-chain relaxations but with the same energy barriers, indicating hydration shell fluctuations driving protein side-chain motions on the picosecond time scales and thus elucidating their ultimate relationship.

Indexed as

Molecular Dynamics SimulationTemperatureAlgorithmsKineticsModels, ChemicalMotionProtein BindingProtein ConformationProteinsSpectrometry, FluorescenceSurface PropertiesThermodynamicsTime FactorsTryptophanWaterProteinsTryptophanWatercoupled fluctuationhydration shell dynamicsprotein side-chain motiontryptophan scanwater-driven relaxation

Identifiers

PMID27339138
PMCPMC4968723
OpenAlexW2462716421

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.