Evidence map›Paper›PMID 27336679›Full record

ArticleNature communications2016

Arf6 controls retromer traffic and intracellular cholesterol distribution via a phosphoinositide-based mechanism.

Catherine Marquer, Huasong Tian, Julie Yi, Jayson Bastien, Claudia Dall'Armi, YoungJoo Yang-Klingler, Bowen Zhou, Robin Barry Chan, Gilbert Di Paolo

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 54 citations in OpenAlex.

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  13. CaAdvances in experimental medicine and biology · 2023
    Article
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  19. Review
  20. Cellular homeostasis in theMolecular biology of the cell · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Catherine MarquerDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Huasong TianDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Julie YiDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Jayson BastienDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Claudia Dall'ArmiDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
YoungJoo Yang-KlinglerDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Bowen ZhouDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Robin Barry ChanDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Gilbert Di PaoloDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York City, New York 10032, USA.
Columbia University Irving Medical Center · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
Role of phospholipids in membrane traffic at the synapseR01NS056049 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LIEM, RONALD K. · 2006 to 2016
$3.7M
NCI NIH HHS P30 CA013696NINDS NIH HHS R01 NS056049
6 · The paper itself

Abstract

Small GTPases play a critical role in membrane traffic. Among them, Arf6 mediates transport to and from the plasma membrane, as well as phosphoinositide signalling and cholesterol homeostasis. Here we delineate the molecular basis for the link between Arf6 and cholesterol homeostasis using an inducible knockout (KO) model of mouse embryonic fibroblasts (MEFs). We find that accumulation of free cholesterol in the late endosomes/lysosomes of Arf6 KO MEFs results from mistrafficking of Niemann-Pick type C protein NPC2, a cargo of the cation-independent mannose-6-phosphate receptor (CI-M6PR). This is caused by a selective increase in an endosomal pool of phosphatidylinositol-4-phosphate (PI4P) and a perturbation of retromer, which controls the retrograde transport of CI-M6PR via sorting nexins, including the PI4P effector SNX6. Finally, reducing PI4P levels in KO MEFs through independent mechanisms rescues aberrant retromer tubulation and cholesterol mistrafficking. Our study highlights a phosphoinositide-based mechanism for control of cholesterol distribution via retromer.

Indexed as

ADP-Ribosylation Factor 6ADP-Ribosylation FactorsAnimalsCholesterolEndosomesFibroblastsHeLa CellsHumansLysosomesMice, KnockoutPhosphatidylinositol PhosphatesReceptor, IGF Type 2Vesicular Transport ProteinsADP-Ribosylation Factor 6ADP-Ribosylation FactorsARF6 protein, humanArf6 protein, mouseCholesterolNpc2 protein, mousephosphatidylinositol 4-phosphatePhosphatidylinositol PhosphatesReceptor, IGF Type 2Vesicular Transport Proteins

Identifiers

PMID27336679
PMCPMC4931008
OpenAlexW2473777292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.