Evidence map›Paper›PMID 27336322›Full record

ArticleComputer methods in biomechanics and biomedical engineering2017

Computational model of mesenchymal migration in 3D under chemotaxis.

F O Ribeiro, M J Gómez-Benito, J Folgado, P R Fernandes, J M García-Aznar

Abstract read
In one paragraph

Article in Computer methods in biomechanics and biomedical engineering, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Integration ofFrontiers in physiology · 2018
    Article
  8. Mechanoreciprocity in cell migration.Nature cell biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

F O Ribeiroa IDMEC , Instituto Superior Técnico, Universidade de Lisboa , Lisbon , Portugal.
M J Gómez-Benitob Multiscale in Mechanical and Biological Engineering (M2BE), Aragón Institute of Engineering Research (I3A), Department of Mechanical Engineering , Universidad de Zaragoza , Zaragoza , Spain.
J Folgadoa IDMEC , Instituto Superior Técnico, Universidade de Lisboa , Lisbon , Portugal.
P R Fernandesa IDMEC , Instituto Superior Técnico, Universidade de Lisboa , Lisbon , Portugal.
J M García-Aznarb Multiscale in Mechanical and Biological Engineering (M2BE), Aragón Institute of Engineering Research (I3A), Department of Mechanical Engineering , Universidad de Zaragoza , Zaragoza , Spain.

Funding

European Research Council 306571
6 · The paper itself

Abstract

Cell chemotaxis is an important characteristic of cellular migration, which takes part in crucial aspects of life and development. In this work, we propose a novel in silico model of mesenchymal 3D migration with competing protrusions under a chemotactic gradient. Based on recent experimental observations, we identify three main stages that can regulate mesenchymal chemotaxis: chemosensing, dendritic protrusion dynamics and cell-matrix interactions. Therefore, each of these features is considered as a different module of the main regulatory computational algorithm. The numerical model was particularized for the case of fibroblast chemotaxis under a PDGF-bb gradient. Fibroblasts migration was simulated embedded in two different 3D matrices - collagen and fibrin - and under several PDGF-bb concentrations. Validation of the model results was provided through qualitative and quantitative comparison with in vitro studies. Our numerical predictions of cell trajectories and speeds were within the measured in vitro ranges in both collagen and fibrin matrices. Although in fibrin, the migration speed of fibroblasts is very low, because fibrin is a stiffer and more entangling matrix. Testing PDGF-bb concentrations, we noticed that an increment of this factor produces a speed increment. At 1 ng mL

Indexed as

Computer SimulationBecaplerminCell CommunicationCell MovementCells, CulturedChemotaxisCollagenFibrinFibroblastsHumansMesenchymal Stem CellsModels, TheoreticalProto-Oncogene Proteins c-sisReproducibility of ResultsBecaplerminCollagenFibrinProto-Oncogene Proteins c-sis3D mesenchymal migrationchemotaxisfibroblastGillespie’s algorithmphosphoinositide 3-kinaseplatelet derived growth factor

Identifiers

PMID27336322
PMCPMC5061084

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.