Evidence map›Paper›PMID 27336225›Full record

ArticlePlant biotechnology journal2017

The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.

Fabien Lombardo, Makoto Kuroki, Shan-Guo Yao, Hiroyuki Shimizu, Tomohito Ikegaya, Mayumi Kimizu, Shinnosuke Ohmori, Takashi Akiyama, Takami Hayashi, Tomoya Yamaguchi and 3 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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  13. The cleistogamy of theBreeding science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Fabien LombardoDivision of Applied Genetics, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Ibaraki, Japan.
Makoto KurokiDivision of Crop Breeding Research, Hokkaido Agricultural Research Center, NARO, Hokkaido, Japan.
Shan-Guo YaoDivision of Crop Development, Central Region Agricultural Research Center, NARO, Niigata, Japan.
Hiroyuki ShimizuDivision of Crop Breeding Research, Hokkaido Agricultural Research Center, NARO, Hokkaido, Japan.
Tomohito IkegayaDivision of Crop Breeding Research, Hokkaido Agricultural Research Center, NARO, Hokkaido, Japan.
Mayumi KimizuDivision of Crop Development, Central Region Agricultural Research Center, NARO, Niigata, Japan.
Shinnosuke OhmoriDivision of Crop Development, Central Region Agricultural Research Center, NARO, Niigata, Japan.
Takashi AkiyamaDivision of Applied Genetics, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Ibaraki, Japan.
Takami HayashiDivision of Crop Breeding Research, Hokkaido Agricultural Research Center, NARO, Hokkaido, Japan.
Tomoya YamaguchiDivision of Agro-Production Technologies and Management Research, Tohoku Agricultural Research Center, NARO, Iwate, Japan.
Setsuo KoikeDivision of Agro-Production Technologies and Management Research, Tohoku Agricultural Research Center, NARO, Iwate, Japan.
Osamu YatouDivision of Crop Development, Central Region Agricultural Research Center, NARO, Niigata, Japan.
Hitoshi YoshidaDivision of Applied Genetics, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Ibaraki, Japan.
Central Region Agricultural Research Center · JPHokkaido Agricultural Research Center · JPNational Agriculture and Food Research Organization · JPTohoku Agricultural Research Center · JPInstitute of Agrobiological Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Outcrossing between cultivated plants and their related wild species may result in the loss of favourable agricultural traits in the progeny or escape of transgenes in the environment. Outcrossing can be physically prevented by using cleistogamous (i.e. closed-flower) plants. In rice, flower opening is dependent on the mechanical action of fleshy organs called lodicules, which are generally regarded as the grass petal equivalents. Lodicule identity and development are specified by the action of protein complexes involving the SPW1 and OsMADS2 transcription factors. In the superwoman1-cleistogamy1 (spw1-cls1) mutant, SPW1 is impaired for heterodimerization with OsMADS2 and consequently spw1-cls1 shows thin, ineffective lodicules. However, low temperatures help stabilise the mutated SPW1/OsMADS2 heterodimer and lodicule development is restored when spw1-cls1 is grown in a cold environment, resulting in the loss of the cleistogamous phenotype. To identify a novel, temperature-stable cleistogamous allele of SPW1, targeted and random mutations were introduced into the SPW1 sequence and their effects over SPW1/OsMADS2 dimer formation were assessed in yeast two-hybrid experiments. In parallel, a novel cleistogamous allele of SPW1 called spw1-cls2 was isolated from a forward genetic screen. In spw1-cls2, a mutation leading to a change of an amino acid involved in DNA binding by the transcription factor was identified. Fertility of spw1-cls2 is somewhat decreased under low temperatures but unlike for spw1-cls1, the cleistogamous phenotype is maintained, making the line a safer and valuable genetic resource for gene containment.

Indexed as

Gene Expression Regulation, PlantMutationAllelesArabidopsis Proteinsbeta-GalactosidaseFlowersGene Expression ProfilingGenes, PlantMADS Domain ProteinsOrgan SizeOryzaPhenotypePlant ProteinsPlants, Genetically ModifiedProtein BindingSequence Homology, Amino AcidArabidopsis Proteinsbeta-GalactosidaseMADS Domain ProteinsPlant ProteinsTranscription Factorsbreedingcleistogamygene flowGMOlodiculeMADS-box gene

Identifiers

PMID27336225
PMCPMC5253472
OpenAlexW2467923707

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.