Evidence map›Paper›PMID 27335624›Full record

ArticleThe open microbiology journal2016

Bioinformatic Analysis of the Human Recombinant Iduronate 2-Sulfate Sulfatase.

Edwin D Morales-Álvarez, Claudia M Rivera-Hoyos, Patricia Landázuri, Raúl A Poutou-Piñales, Aura M Pedroza-Rodríguez

Open access · diamondAbstract read
In one paragraph

Article in The open microbiology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Edwin D Morales-ÁlvarezResearch Group on Cardiovascular and Metabolic Diseases (GECAVYME), Faculty of Health Sciences, University of Quindio, Armenia-Quindío, Colombia, South America; Department of Chemistry, Research Group on Genetics, Biodiversity and Ecosystem Management (GEBIOME), Faculty of Exact and Natural Sciences, University of Caldas, Manizales-Caldas, Colombia, South America.
Claudia M Rivera-HoyosResearch Group on Cardiovascular and Metabolic Diseases (GECAVYME), Faculty of Health Sciences, University of Quindio, Armenia-Quindío, Colombia, South America; Laboratory of Molecular Biotechnology, Group of Environmental and Industrial Biotechnology (GBAI), Department of Microbiology, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá, D.C. Colombia, South America.
Patricia LandázuriResearch Group on Cardiovascular and Metabolic Diseases (GECAVYME), Faculty of Health Sciences, University of Quindio, Armenia-Quindío, Colombia, South America.
Raúl A Poutou-PiñalesLaboratory of Molecular Biotechnology, Group of Environmental and Industrial Biotechnology (GBAI), Department of Microbiology, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá, D.C. Colombia, South America.
Aura M Pedroza-RodríguezLaboratory of Environmental and Soil Microbiology, Group of Environmental and Industrial Biotechnology (GBAI), Department of Microbiology, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá, D.C. Colombia, South America.
Pontificia Universidad Javeriana · COUniversity of Quindío · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mucopolysaccharidosis type II is a human recessive disease linked to the X chromosome caused by deficiency of lysosomal enzyme Iduronate 2-Sulfate Sulfatase (IDS), which leads to accumulation of glycosaminoglycans in tissues and organs. The human enzyme has been expressed in Escherichia coli and Pichia pastoris in attempt to develop more successful expression systems that allow the production of recombinant IDS for Enzyme Replacement Therapy (ERT). However, the preservation of native signal peptide in the sequence has caused conflicts in processing and recognition in the past, which led to problems in expression and enzyme activity. With the main object being the improvement of the expression system, we eliminate the native signal peptide of human recombinant IDS. The resulting sequence showed two modified codons, thus, our study aimed to analyze computationally the nucleotide sequence of the IDSnh without signal peptide in order to determine the 3D structure and other biochemical properties to compare them with the native human IDS (IDSnh). Results showed that there are no significant differences between both molecules in spite of the two-codon modifications detected in the recombinant DNA sequence.

Indexed as

Bioinformaticshunter syndromeiduronate 2-sulfate sulfatasenative signal peptidethree dimensional protein structure

Identifiers

PMID27335624
PMCPMC4899537
OpenAlexW2414284413

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.