Evidence map›Paper›PMID 27335461›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

YY1 plays an essential role at all stages of B-cell differentiation.

Eden Kleiman, Haiqun Jia, Salvatore Loguercio, Andrew I Su, Ann J Feeney

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 106 citations in OpenAlex.

  1. Risk variants disrupting enhancers of TProceedings of the National Academy of Sciences of the United States of America · 2019
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  2. mNature metabolism · 2026
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  3. Review
  4. Defective Astrocyte Maturation Drives Cerebellar Neuroinflammation and Degeneration.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
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  10. Postprandial cardiac hypertrophy is sustained by mechanics, epigenetic, and metabolic reprogramming in pythons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  13. Review
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  15. Article
  16. Review
  17. Article
  18. Article
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  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Eden KleimanDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037;
Haiqun JiaDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037;
Salvatore LoguercioDepartment of Molecular Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037.
Andrew I SuDepartment of Molecular Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037.
Ann J FeeneyDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037; feeney@scripps.edu.
Scripps Research Institute · US

Funding

Scripps Translational Science InstituteUL1TR001114 · NCATS · SCRIPPS RESEARCH INSTITUTE, THE · PI TOPOL, ERIC JEFFREY · 2013 to 2017
$24.0M
Role of CTCF and Cohesin in V(D)J RearrangementR01AI082918 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI FEENEY, ANN J · 2010 to 2014
$2.4M
Genes and pathways regulated by YY1 in early and late B cell differentiationR03AI115127 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI FEENEY, ANN J · 2015 to 2016
$190k
NCATS NIH HHS UL1 TR001114NIAID NIH HHS R01 AI082918NIAID NIH HHS R03 AI115127
6 · The paper itself

Abstract

Ying Yang 1 (YY1) is a ubiquitously expressed transcription factor shown to be essential for pro-B-cell development. However, the role of YY1 in other B-cell populations has never been investigated. Recent bioinformatics analysis data have implicated YY1 in the germinal center (GC) B-cell transcriptional program. In accord with this prediction, we demonstrated that deletion of YY1 by Cγ1-Cre completely prevented differentiation of GC B cells and plasma cells. To determine if YY1 was also required for the differentiation of other B-cell populations, we deleted YY1 with CD19-Cre and found that all peripheral B-cell subsets, including B1 B cells, require YY1 for their differentiation. Transitional 1 (T1) B cells were the most dependent upon YY1, being sensitive to even a half-dosage of YY1 and also to short-term YY1 deletion by tamoxifen-induced Cre. We show that YY1 exerts its effects, in part, by promoting B-cell survival and proliferation. ChIP-sequencing shows that YY1 predominantly binds to promoters, and pathway analysis of the genes that bind YY1 show enrichment in ribosomal functions, mitochondrial functions such as bioenergetics, and functions related to transcription such as mRNA splicing. By RNA-sequencing analysis of differentially expressed genes, we demonstrated that YY1 normally activates genes involved in mitochondrial bioenergetics, whereas it normally down-regulates genes involved in transcription, mRNA splicing, NF-κB signaling pathways, the AP-1 transcription factor network, chromatin remodeling, cytokine signaling pathways, cell adhesion, and cell proliferation. Our results show the crucial role that YY1 plays in regulating broad general processes throughout all stages of B-cell differentiation.

Indexed as

Cell DifferentiationGene Expression RegulationAnimalsB-LymphocytesCell LineageDNA HelicasesFemaleGerminal CenterJumonji Domain-Containing Histone DemethylasesMaleMice, Inbred C57BLYY1 Transcription FactorDNA HelicasesJumonji Domain-Containing Histone DemethylasesKdm6b protein, mouseMi-2beta protein, mouseYy1 protein, mouseYY1 Transcription FactorB lymphocytesdifferentiationmitochondrial bioenergeticstranscriptionYY1

Identifiers

PMID27335461
PMCPMC4941496
OpenAlexW2470638261

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.