Evidence map›Paper›PMID 27335450›Full record

ReviewThe Plant cell2016

Advancing Crop Transformation in the Era of Genome Editing.

Fredy Altpeter, Nathan M Springer, Laura E Bartley, Ann E Blechl, Thomas P Brutnell, Vitaly Citovsky, Liza J Conrad, Stanton B Gelvin, David P Jackson, Albert P Kausch and 10 more

Open access · greenAbstract readReview
In one paragraph

Review in The Plant cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 335 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
335citing papers in PubMed, 1 pooled it
27.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

335 citing papers in PubMed, 1 synthesis or guideline pooled it, 682 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Genome Editing Approaches in Flax (International journal of molecular sciences · 2026
    Review
  8. Review
  9. Article
  10. Article
  11. Plants (Basel, Switzerland) · 2026
    Article
  12. Review
  13. Review
  14. Virus-induced transgene- and tissue culture-free heritable genome editing in tomato.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. The Promise of Synthetic Biology for Redesigning Plant Architecture.International journal of molecular sciences · 2026
    Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review

275 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 19 institutions in 1 country.

Fredy AltpeterAgronomy Department, Plant Molecular and Cellular Biology Program, University of Florida, IFAS, Gainesville, Florida 32611.ORCID 0000-0002-0894-4976
Nathan M SpringerDepartment of Plant Biology, Microbial and Plant Genomics Institute, University of Minnesota, Saint Paul, Minnesota 55108.ORCID 0000-0002-7301-4759
Laura E BartleyDepartment of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma 73019.ORCID 0000-0001-8610-7551
Ann E BlechlU.S. Department of Agriculture-Agriculture Research Service, Western Regional Research Center, Albany, California 94710.
Thomas P BrutnellEnterprise Institute for Renewable Fuels, Donald Danforth Plant Science Center, St. Louis, Missouri 63132.
Vitaly CitovskyDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York 11794.ORCID 0000-0003-2024-6844
Liza J ConradNatural Sciences Collegium, Eckerd College, St. Petersburg, Florida 33711.
Stanton B GelvinDepartment of Biological Sciences, Purdue University, West Lafayette, Indiana 47907.
David P JacksonCold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724.
Albert P KauschDepartment of Cellular and Molecular Biology, University of Rhode Island, Kingston, Rhode Island 02881.
Peggy G LemauxDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720.
June I MedfordDepartment of Biology, Colorado State University, Fort Collins, Colorado 80523.
Martha L Orozco-CárdenasPlant Transformation Research Center, University of California, Riverside, California 92521.
David M TricoliPlant Transformation Facility, University of California, Davis, California 95616.
Joyce Van EckThe Boyce Thompson Institute, Ithaca, New York 14853.
Daniel F VoytasDepartment of Genetics, Cell Biology and Development and Center for Genome Engineering, University of Minnesota, Minneapolis, Minnesota 55455.
Virginia WalbotDepartment of Biology, Stanford University, Stanford, California 94305.ORCID 0000-0002-1596-7279
Kan WangDepartment of Agronomy and Center for Plant Transformation, Plant Sciences Institute, Iowa State University, Ames, Iowa 50011.ORCID 0000-0003-2474-5800
Zhanyuan J ZhangPlant Transformation Core Facility, Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211.ORCID 0000-0002-9666-165X
C Neal StewartDepartment of Plant Sciences, University of Tennessee, Knoxville, Tennessee 37996 nealstewart@utk.edu.ORCID 0000-0003-3026-9193
University of Minnesota · USCold Spring Harbor Laboratory · USColorado State University · USDonald Danforth Plant Science Center · USEckerd College · USIowa State University · USIthaca College · USPurdue University West Lafayette · USStanford University · USStony Brook University · USUniversity of California, Berkeley · USUniversity of California, Davis · USUniversity of California, Riverside · USUniversity of Florida · USUniversity of Missouri · USUniversity of Oklahoma · USUniversity of Rhode Island · USUniversity of Tennessee at Knoxville · USWestern Regional Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant transformation has enabled fundamental insights into plant biology and revolutionized commercial agriculture. Unfortunately, for most crops, transformation and regeneration remain arduous even after more than 30 years of technological advances. Genome editing provides novel opportunities to enhance crop productivity but relies on genetic transformation and plant regeneration, which are bottlenecks in the process. Here, we review the state of plant transformation and point to innovations needed to enable genome editing in crops. Plant tissue culture methods need optimization and simplification for efficiency and minimization of time in culture. Currently, specialized facilities exist for crop transformation. Single-cell and robotic techniques should be developed for high-throughput genomic screens. Plant genes involved in developmental reprogramming, wound response, and/or homologous recombination should be used to boost the recovery of transformed plants. Engineering universal Agrobacterium tumefaciens strains and recruiting other microbes, such as Ensifer or Rhizobium, could facilitate delivery of DNA and proteins into plant cells. Synthetic biology should be employed for de novo design of transformation systems. Genome editing is a potential game-changer in crop genetics when plant transformation systems are optimized.

Indexed as

Gene EditingAgrobacterium tumefaciensCrops, AgriculturalDNA, PlantGenome, PlantRecombination, GeneticTransformation, GeneticDNA, Plant

Identifiers

PMID27335450
PMCPMC4981132
OpenAlexW2471889160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.