Evidence map›Paper›PMID 27335351›Full record

ArticlePlant & cell physiology2016

N-Glycomic and Microscopic Subcellular Localization Analyses of NPP1, 2 and 6 Strongly Indicate that trans-Golgi Compartments Participate in the Golgi to Plastid Traffic of Nucleotide Pyrophosphatase/Phosphodiesterases in Rice.

Kentaro Kaneko, Takeshi Takamatsu, Takuya Inomata, Kazusato Oikawa, Kimiko Itoh, Kazuko Hirose, Maho Amano, Shin-Ichiro Nishimura, Kiminori Toyooka, Ken Matsuoka and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant & cell physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (International journal of molecular sciences · 2020
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. TheFrontiers in plant science · 2017
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Kentaro KanekoGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan.
Takeshi TakamatsuGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan Department of Applied Biological Chemistry, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan.
Takuya InomataGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan.
Kazusato OikawaDepartment of Applied Biological Chemistry, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan.
Kimiko ItohGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan Department of Applied Biological Chemistry, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan.
Kazuko HiroseGraduate School of Advanced Life Science, Frontier Research Center for Post-genomic Science and Technology, Hokkaido University, Sapporo, 001-0021 Japan.
Maho AmanoGraduate School of Advanced Life Science, Frontier Research Center for Post-genomic Science and Technology, Hokkaido University, Sapporo, 001-0021 Japan.
Shin-Ichiro NishimuraGraduate School of Advanced Life Science, Frontier Research Center for Post-genomic Science and Technology, Hokkaido University, Sapporo, 001-0021 Japan.
Kiminori ToyookaRIKEN Center for Sustainable Resource Science, Kanagawa, 230-0045 Japan.
Ken MatsuokaLaboratory of Plant Nutrition, Faculty of Agriculture, Kyushu University, Fukuoka, 812-8581 Japan.
Javier Pozueta-RomeroInstituto de Agrobiotecnología (CSIC, UPNA, Gobierno de Navarra), Mutiloako etorbidea zenbaki gabe, 31192 Mutiloabeti, Nafarroa, Spain.
Toshiaki MitsuiGraduate School of Science and Technology, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan Department of Applied Biological Chemistry, Niigata University, 2-8050 Ikarashi, Niigata, 950-2181 Japan t.mitsui@agr.niigata-u.ac.jp.
Niigata University · JPHokkaido University · JPGobierno de Navarra · ESKyushu University · JPRIKEN Center for Sustainable Resource Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleotide pyrophosphatase/phosphodiesterases (NPPs) are widely distributed N-glycosylated enzymes that catalyze the hydrolytic breakdown of numerous nucleotides and nucleotide sugars. In many plant species, NPPs are encoded by a small multigene family, which in rice are referred to NPP1-NPP6 Although recent investigations showed that N-glycosylated NPP1 is transported from the endoplasmic reticulum (ER)-Golgi system to the chloroplast through the secretory pathway in rice cells, information on N-glycan composition and subcellular localization of other NPPs is still lacking. Computer-assisted analyses of the amino acid sequences deduced from different Oryza sativa NPP-encoding cDNAs predicted all NPPs to be secretory glycoproteins. Confocal fluorescence microscopy observation of cells expressing NPP2 and NPP6 fused with green fluorescent protein (GFP) revealed that NPP2 and NPP6 are plastidial proteins. Plastid targeting of NPP2-GFP and NPP6-GFP was prevented by brefeldin A and by the expression of ARF1(Q71L), a dominant negative mutant of ADP-ribosylation factor 1 that arrests the ER to Golgi traffic, indicating that NPP2 and NPP6 are transported from the ER-Golgi to the plastidial compartment. Confocal laser scanning microscopy and high-pressure frozen/freeze-substituted electron microscopy analyses of transgenic rice cells ectopically expressing the trans-Golgi marker sialyltransferase fused with GFP showed the occurrence of contact of Golgi-derived membrane vesicles with cargo and subsequent absorption into plastids. Sensitive and high-throughput glycoblotting/mass spectrometric analyses showed that complex-type and paucimannosidic-type glycans with fucose and xylose residues occupy approximately 80% of total glycans of NPP1, NPP2 and NPP6. The overall data strongly indicate that the trans-Golgi compartments participate in the Golgi to plastid trafficking and targeting mechanism of NPPs.

Indexed as

GlycomicsADP-Ribosylation Factor 1Amino Acid SequenceAnimalsBrefeldin AChloroplastsEndoplasmic ReticulumGenes, ReporterGlycosylationGolgi ApparatusMultigene FamilyOryzaPhosphoric Diester HydrolasesPlant ProteinsPlastidsProtein TransportADP-Ribosylation Factor 1Brefeldin Anucleotide pyrophosphatasePhosphoric Diester HydrolasesPlant ProteinsPyrophosphatasesRecombinant Fusion ProteinsGlycoproteinGolgiMembrane trafficN-glycomeOryza sativaPlastid

Identifiers

PMID27335351
PMCPMC4970613
OpenAlexW2345394563

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.