Evidence map›Paper›PMID 27334919›Full record

ArticleThe Journal of biological chemistry2016

Lipids Regulate Lck Protein Activity through Their Interactions with the Lck Src Homology 2 Domain.

Ren Sheng, Da-Jung Jung, Antonina Silkov, Hyunjin Kim, Indira Singaram, Zhi-Gang Wang, Yao Xin, Eui Kim, Mi-Jeong Park, Pallavi Thiagarajan-Rosenkranz and 7 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. PI(3,5)PScience advances · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Lipid Binding of SH2 Domains.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  10. Review
  11. Article
  12. Role of the membrane anchor in the regulation of Lck activity.The Journal of biological chemistry · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Ren ShengFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Da-Jung Jungthe Division of Integrative Biosciences and Biotechnology and.
Antonina Silkovthe Department of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University, New York, New York 11032, and.
Hyunjin KimFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Indira SingaramFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Zhi-Gang WangFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Yao XinFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Eui Kimthe Division of Integrative Biosciences and Biotechnology and.
Mi-Jeong Parkthe Division of Integrative Biosciences and Biotechnology and.
Pallavi Thiagarajan-RosenkranzFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Sean SmrtFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
Barry Honigthe Department of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University, New York, New York 11032, and.
Kwanghee Baekthe Department of Genetic Engineering, Kyung Hee University, Yongin 446-701, Korea.
Sungho RyuDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea.
Justin LorieauFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607.
You-Me Kimthe Division of Integrative Biosciences and Biotechnology and Department of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea, youmekim@postech.ac.kr.
Wonhwa ChoFrom the Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, the Department of Genetic Engineering, Kyung Hee University, Yongin 446-701, Korea wcho@uic.edu.

Funding

Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
COMPUTER STUDIES OF PROTEIN STRUCTURE AND FUNCTIONR01GM030518 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HONIG, BARRY H · 1985 to 2020
$4.5M
Membrane Targeting by Phosphoinositide-Binding ProteinsR01GM068849 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHO, WONHWA · 2003 to 2015
$3.9M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
COMPUTER STUDIES OF PROTEIN STRUCTURE AND FUNCTIONR37GM030518 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HONIG, BARRY H · 1995 to 2004
$1.5M
Regulatory Roles of Cellular CholesterolR01GM110128 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHO, WONHWA · 2014 to 2016
$1.2M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NCI NIH HHS U54 CA121852NIGMS NIH HHS R01 GM030518NIGMS NIH HHS R01 GM068849NIGMS NIH HHS R01 GM110128NIGMS NIH HHS R37 GM030518NIGMS NIH HHS U54 GM094597NIH HHS S10 OD012351NIH HHS S10 OD021764
6 · The paper itself

Abstract

Lymphocyte-specific protein-tyrosine kinase (Lck) plays an essential role in T cell receptor (TCR) signaling and T cell development, but its activation mechanism is not fully understood. To explore the possibility that plasma membrane (PM) lipids control TCR signaling activities of Lck, we measured the membrane binding properties of its regulatory Src homology 2 (SH2) and Src homology 3 domains. The Lck SH2 domain binds anionic PM lipids with high affinity but with low specificity. Electrostatic potential calculation, NMR analysis, and mutational studies identified the lipid-binding site of the Lck SH2 domain that includes surface-exposed basic, aromatic, and hydrophobic residues but not the phospho-Tyr binding pocket. Mutation of lipid binding residues greatly reduced the interaction of Lck with the ζ chain in the activated TCR signaling complex and its overall TCR signaling activities. These results suggest that PM lipids, including phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate, modulate interaction of Lck with its binding partners in the TCR signaling complex and its TCR signaling activities in a spatiotemporally specific manner via its SH2 domain.

Indexed as

Amino Acid SubstitutionHumansJurkat CellsLymphocyte Specific Protein Tyrosine Kinase p56(lck)Mutation, MissensePhosphatidylinositol 4,5-DiphosphatePhosphatidylinositol PhosphatesReceptors, Antigen, T-CellSignal Transductionsrc Homology DomainsLymphocyte Specific Protein Tyrosine Kinase p56(lck)phosphatidylinositol 3,4,5-triphosphatePhosphatidylinositol 4,5-DiphosphatePhosphatidylinositol PhosphatesReceptors, Antigen, T-Cellcell signalingLckphosphoinositideplasma membraneSrc homology 2 domain (SH2 domain)T-cell receptor (TCR)

Identifiers

PMID27334919
PMCPMC5016160

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.