Evidence map›Paper›PMID 27334567›Full record

ArticleScientific reports2016

Pathway Analyses Identify Novel Variants in the WNT Signaling Pathway Associated with Tuberculosis in Chinese Population.

Xuejiao Hu, Juan Zhou, Xuerong Chen, Yanhong Zhou, Xingbo Song, Bei Cai, Jingya Zhang, Xiaojun Lu, Binwu Ying

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. A Study of the Resistance of Hu Sheep Lambs toAnimals : an open access journal from MDPI · 2024
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  8. Oncotarget · 2018
    Article
  9. Article
  10. Activation of the Wnt Pathway byFrontiers in immunology · 2017
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xuejiao HuDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Juan ZhouDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Xuerong ChenDivision of Pulmonary Disease, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Yanhong ZhouDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Xingbo SongDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Bei CaiDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Jingya ZhangDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Xiaojun LuDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Binwu YingDepartment of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, P. R. China.
Sichuan University · CNWest China Hospital of Sichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis remains a global public health problem, and its immunopathogenesis is still poorly understood. In this study, 25 single nucleotide polymorphisms (SNPs) in the WNT pathway were evaluated in relation to tuberculosis risk in a Chinese Han discovery set, and 6 candidate susceptible SNPs were further validated in a Chinese Tibetan cohort. Luciferase reporter assay, RT-qPCR and Western blot were used to assess the functionality of the important WNT polymorphisms. Five polymorphisms were associated with tuberculosis susceptibility after Bonferroni correction: SFRP1 rs4736958, CTNNB1 rs9859392, rs9870255 and rs3864004 showed decreased tuberculosis risk; SFRP1 rs7832767 was related to an increased risk (OR = 1.81, 95% CI = 1.30-2.52, p = 0.010). Patients with TT genotype of rs4736958 and rs7832767 correlated with higher CRP concentrations (p = 0.003, <0.001, respectively). Functional assays revealed that mutant alleles of rs9859392 (G), rs9870255 (C) and rs3864004 (A) were associated with significantly decreased transcriptional activity, lower CTNNB1 mRNA expression and p-β-catenin level, which were consistent with their effects of decreasing TB risk. Our results provide evidences that WNT pathway polymorphisms influence tuberculosis susceptibility and host immune response to Mycobacterium tuberculosis, suggesting that these variations may serve as novel markers for identifying the risk of developing tuberculosis.

Indexed as

AdultAllelesAsian Peoplebeta CateninFemaleGenetic Predisposition to DiseaseGenotypeHumansMalePolymorphism, Single NucleotideRNA, MessengerTranscription, GeneticTuberculosisWnt Signaling Pathwaybeta CateninRNA, Messenger

Identifiers

PMID27334567
PMCPMC4917881
OpenAlexW2464554566

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.