Evidence map›Paper›PMID 27334269›Full record

ArticleGenetics2016

Facilitation of Endosomal Recycling by an IRG Protein Homolog Maintains Apical Tubule Structure in Caenorhabditis elegans.

Kelly A Grussendorf, Christopher J Trezza, Alexander T Salem, Hikmat Al-Hashimi, Brendan C Mattingly, Drew E Kampmeyer, Liakot A Khan, David H Hall, Verena Göbel, Brian D Ackley and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Epithelial morphogenesis, tubulogenesis and forces in organogenesis.Current topics in developmental biology · 2021
    Review
  3. Article
  4. A Series of Tubes: TheJournal of developmental biology · 2020
    Review
  5. NovelG3 (Bethesda, Md.) · 2019
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Kelly A GrussendorfDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045 Department of Biological Sciences, Minnesota State University, Mankato, Minnesota 56001.
Christopher J TrezzaDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045.
Alexander T SalemDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045.
Hikmat Al-HashimiDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045.
Brendan C MattinglyDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045.
Drew E KampmeyerDepartment of Biological Sciences, Minnesota State University, Mankato, Minnesota 56001.
Liakot A KhanMucosal Immunology and Biology Research Center, Developmental Biology and Genetics Core, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114.
David H HallDepartment of Neuroscience, Center for Caenorhabditis elegans Anatomy, Albert Einstein College of Medicine, Bronx, New York 10461.ORCID 0000-0001-8459-9820
Verena GöbelMucosal Immunology and Biology Research Center, Developmental Biology and Genetics Core, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114.
Brian D AckleyDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045.ORCID 0000-0002-1257-2407
Matthew BuechnerDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045 buechner@ku.edu.ORCID 0000-0002-2103-9399
University of Kansas · USAlbert Einstein College of Medicine · USHarvard University · USMassachusetts General Hospital · USMinnesota State University, Mankato · US

Funding

Center for C elegans AnatomyR24OD010943 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DAVID H. HALL, Nathan Schroeder · 2012 to 2026
$9.6M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
CENTER FOR CAENORHABDITIS ELGANS ANATOMYR24RR012596 · NCRR · YESHIVA UNIVERSITY · PI HALL, DAVID H. · 1998 to 2011
$8.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
MBRS IMSD PROGRAM AT THE UNIVERSITY OF KANSASR25GM062232 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI CARTWRIGHT, PAULYN, HANSON, PAUL R. · 2001 to 2018
$6.9M
Development of a C. elegans genetic model for Charcot-Marie-Tooth Syndrome 4HR03NS067323 · NINDS · UNIVERSITY OF KANSAS LAWRENCE · PI BUECHNER, MATTHEW · 2009 to 2010
$139k
NCRR NIH HHS R24 RR012596NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R25 GM062232NIH HHS P40 OD010440NIH HHS R24 OD010943NINDS NIH HHS R03 NS067323
6 · The paper itself

Abstract

Determination of luminal diameter is critical to the function of small single-celled tubes. A series of EXC proteins, including EXC-1, prevent swelling of the tubular excretory canals in Caenorhabditis elegans In this study, cloning of exc-1 reveals it to encode a homolog of mammalian IRG proteins, which play roles in immune response and autophagy and are associated with Crohn's disease. Mutants in exc-1 accumulate early endosomes, lack recycling endosomes, and exhibit abnormal apical cytoskeletal structure in regions of enlarged tubules. EXC-1 interacts genetically with two other EXC proteins that also affect endosomal trafficking. In yeast two-hybrid assays, wild-type and putative constitutively active EXC-1 binds to the LIM-domain protein EXC-9, whose homolog, cysteine-rich intestinal protein, is enriched in mammalian intestine. These results suggest a model for IRG function in forming and maintaining apical tubule structure via regulation of endosomal recycling.

Indexed as

AnimalsAutophagyCaenorhabditis elegansCaenorhabditis elegans ProteinsCrohn DiseaseCytoskeletonEndosomesHumansKidney TubulesMetalloproteinsProtein TransportTwo-Hybrid System TechniquesCaenorhabditis elegans ProteinsExc-9 protein, C elegansMetalloproteinsendosomesimmunity-related GTPaseIRGtraffickingtubulogenesis

Identifiers

PMID27334269
PMCPMC4981278
OpenAlexW2462254951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.