Evidence map›Paper›PMID 27333878›Full record

ArticleGenome biology and evolution2016

Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages.

Maarten J Gilbert, William G Miller, Emma Yee, Aldert L Zomer, Linda van der Graaf-van Bloois, Collette Fitzgerald, Ken J Forbes, Guillaume Méric, Samuel K Sheppard, Jaap A Wagenaar and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

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  7. Phylogenomic analysis forVeterinary world · 2021
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  10. Zoonotic and Public Health Implications ofPathogens (Basel, Switzerland) · 2020
    Review
  11. Pathogenomics of EmergingClinical microbiology reviews · 2019
    Review
  12. Draft Genome Sequence of Campylobacter fetus subsp.Microbiology resource announcements · 2019
    Article
  13. Living in Cold Blood:Frontiers in microbiology · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 3 countries.

Maarten J GilbertDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, the Netherlands.
William G MillerUS Department of Agriculture, Produce Safety and Microbiology Research Unit, Agricultural Research Service, Albany, California.
Emma YeeUS Department of Agriculture, Produce Safety and Microbiology Research Unit, Agricultural Research Service, Albany, California.
Aldert L ZomerDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, the Netherlands WHO Collaborating Center for Campylobacter/OIE Reference Laboratory for Campylobacteriosis, Utrecht, the Netherlands.
Linda van der Graaf-van BlooisDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, the Netherlands WHO Collaborating Center for Campylobacter/OIE Reference Laboratory for Campylobacteriosis, Utrecht, the Netherlands.
Collette FitzgeraldBiotechnology Core Facility Branch, Division of Scientific Resources, National Center for Emerging and Zoonotic Infectious Diseases, CDC, Atlanta, Georgia.
Ken J ForbesSchool of Medicine and Dentistry, University of Aberdeen, United Kingdom.
Guillaume MéricCollege of Medicine, Institute of Life Science, Swansea University, United Kingdom.
Samuel K SheppardCollege of Medicine, Institute of Life Science, Swansea University, United Kingdom MRC Cloud-Based Infrastructure for Microbial Bioinformatics (CLIMB) Centre, Swansea University, United Kingdom Department of Zoology, University of Oxford, United Kingdom.
Jaap A WagenaarDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, the Netherlands WHO Collaborating Center for Campylobacter/OIE Reference Laboratory for Campylobacteriosis, Utrecht, the Netherlands Central Veterinary Institute of Wageningen UR, Lelystad, the Netherlands.
Birgitta DuimDepartment of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, the Netherlands WHO Collaborating Center for Campylobacter/OIE Reference Laboratory for Campylobacteriosis, Utrecht, the Netherlands b.duim@uu.nl.
Utrecht University · NLAgricultural Research Service · USNational Center for Emerging and Zoonotic Infectious Diseases · USSwansea University · GBUnited States Department of Agriculture · USUniversity of Aberdeen · GBUniversity of Oxford · GBWageningen University & Research · NL

Funding

Medical Research Council MR/L015080/1
6 · The paper itself

Abstract

Campylobacter fetus currently comprises three recognized subspecies, which display distinct host association. Campylobacter fetus subsp. fetus and C fetus subsp. venerealis are both associated with endothermic mammals, primarily ruminants, whereas C fetus subsp. testudinum is primarily associated with ectothermic reptiles. Both C. fetus subsp. testudinum and C. fetus subsp. fetus have been associated with severe infections, often with a systemic component, in immunocompromised humans. To study the genetic factors associated with the distinct host dichotomy in C. fetus, whole-genome sequencing and comparison of mammal- and reptile-associated C fetus was performed. The genomes of C fetus subsp. testudinum isolated from either reptiles or humans were compared with elucidate the genetic factors associated with pathogenicity in humans. Genomic comparisons showed conservation of gene content and organization among C fetus subspecies, but a clear distinction between mammal- and reptile-associated C fetus was observed. Several genomic regions appeared to be subspecies specific, including a putative tricarballylate catabolism pathway, exclusively present in C fetus subsp. testudinum strains. Within C fetus subsp. testudinum, sapA, sapB, and sapAB type strains were observed. The recombinant locus iamABC (mlaFED) was exclusively associated with invasive C fetus subsp. testudinum strains isolated from humans. A phylogenetic reconstruction was consistent with divergent evolution in host-associated strains and the existence of a barrier to lateral gene transfer between mammal- and reptile-associated C fetus Overall, this study shows that reptile-associated C fetus subsp. testudinum is genetically divergent from mammal-associated C fetus subspecies.

Indexed as

Evolution, MolecularAnimalsCampylobacter fetusCampylobacter InfectionsGenetic VariationGene Transfer, HorizontalHost-Pathogen InteractionsHumansMammalsPhylogenyReptilesSpecies Specificitycampylobacter fetuscomparative genomicsevolutionmammalrecombinationreptile

Identifiers

PMID27333878
PMCPMC4943207
OpenAlexW2468175722

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.