Evidence map›Paper›PMID 27332117›Full record

ArticleBiophysical journal2016

A Comparative Study of G-Quadruplex Unfolding and DNA Reeling Activities of Human RECQ5 Helicase.

Jagat B Budhathoki, Parastoo Maleki, William A Roy, Pavel Janscak, Jaya G Yodh, Hamza Balci

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

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  10. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  11. G-quadruplex DNA: a novel target for drug design.Cellular and molecular life sciences : CMLS · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jagat B BudhathokiDepartment of Physics, Kent State University, Kent, Ohio.
Parastoo MalekiDepartment of Physics, Kent State University, Kent, Ohio.
William A RoyDepartment of Physics, Kent State University, Kent, Ohio.
Pavel JanscakInstitute of Molecular Cancer Research, University of Zurich, Zurich, Switzerland.
Jaya G YodhDepartment of Physics and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, Illinois. Electronic address: jyodh@illinois.edu.
Hamza BalciDepartment of Physics, Kent State University, Kent, Ohio. Electronic address: hbalci@kent.edu.
Kent State University · USUniversity of Illinois Urbana-Champaign · USUniversity of Zurich · CH

Funding

A Single Molecule Exploration of Protein and G-quadruplex InteractionsR15GM109386 · NIGMS · KENT STATE UNIVERSITY · PI BALCI, HAMZA · 2015 to 2015
$346k
NIGMS NIH HHS R15 GM109386
6 · The paper itself

Abstract

RECQ5 is one of five members of the RecQ family of helicases in humans, which include RECQ1, Bloom (BLM), Werner (WRN), RECQ4, and RECQ5. Both WRN and BLM have been shown to resolve G-quadruplex (GQ) structures. Deficiencies in unfolding GQ are known to result in DNA breaks and genomic instability, which are prominent in Werner and Bloom syndromes. RECQ5 is significant in suppressing sister chromatid exchanges during homologous recombination but its GQ unfolding activity are not known. We performed single-molecule studies under different salt (50-150 mM KCl or NaCl) and ATP concentrations on different GQ constructs including human telomeric GQ (with different overhangs and polarities) and GQ formed by thrombin-binding aptamer to investigate this activity. These studies demonstrated a RECQ5-mediated GQ unfolding activity that was an order of magnitude weaker than BLM and WRN. On the other hand, BLM and RECQ5 demonstrated similar single-stranded DNA (ssDNA) reeling activities that were not coupled to GQ unfolding. These results demonstrate overlap in function between these RecQ helicases; however, the relatively weak GQ destabilization activity of RECQ5 compared to BLM and WRN suggests that RECQ5 is not primarily associated with GQ destabilization, but could substitute for the more efficient helicases under conditions where their activity is compromised. In addition, these results implicate a more general role for helicase-promoted ssDNA reeling activity such as removal of proteins at the replication fork, whereas the association of ssDNA reeling with GQ destabilization is more helicase-specific.

Indexed as

G-QuadruplexesAdenosine TriphosphateDNAHumansPotassium ChlorideRecQ HelicasesSodium ChlorideTelomereWerner Syndrome HelicaseAdenosine TriphosphateBloom syndrome proteinDNAPotassium ChlorideRecQ HelicasesRECQL5 protein, humanSodium ChlorideWerner Syndrome HelicaseWRN protein, human

Identifiers

PMID27332117
PMCPMC4919422
OpenAlexW2469624869

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.