Evidence map›Paper›PMID 27331404›Full record

ArticlePloS one2016

Association of HLA-G 3' Untranslated Region Polymorphisms with Systemic Lupus Erythematosus in a Japanese Population: A Case-Control Association Study.

Yuki Hachiya, Aya Kawasaki, Shomi Oka, Yuya Kondo, Satoshi Ito, Isao Matsumoto, Makio Kusaoi, Hirofumi Amano, Akiko Suda, Keigo Setoguchi and 17 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. HLA-G and the MHC Cusp Theory.Frontiers in immunology · 2022
    Review
  7. Immunogenetic Relationship ofInternational journal of general medicine · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 12 institutions in 1 country.

Yuki HachiyaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Aya KawasakiMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Shomi OkaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Yuya KondoMaster's Program in Medical Sciences, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Satoshi ItoDepartment of Internal Medicine (Rheumatology), Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Isao MatsumotoMaster's Program in Medical Sciences, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Makio KusaoiDepartment of Internal Medicine and Rheumatology, Juntendo University School of Medicine, Tokyo, Japan.
Hirofumi AmanoDepartment of Internal Medicine and Rheumatology, Juntendo University School of Medicine, Tokyo, Japan.
Akiko SudaDepartment of Rheumatology, Yokohama Minami Kyosai Hospital, Yokohama, Kanagawa, Japan.
Keigo SetoguchiAllergy and Immunological Diseases, Tokyo Metropolitan Cancer and Infectious Diseases Center Komagome Hospital, Tokyo, Japan.
Tatsuo NagaiDepartment of Rheumatology and Infectious Diseases, Kitasato University School of Medicine, Sagamihara, Japan.
Kota ShimadaDepartment of Rheumatology, Tokyo Metropolitan Tama Medical Center, Fuchu, Tokyo, Japan.
Shoji SugiiDepartment of Rheumatology, Tokyo Metropolitan Tama Medical Center, Fuchu, Tokyo, Japan.
Akira OkamotoDepartment of Rheumatology, Himeji Medical Center, National Hospital Organization, Himeji, Hyogo, Japan.
Noriyuki ChibaDepartment of Rheumatology, Morioka Hospital, National Hospital Organization, Morioka, Iwate, Japan.
Eiichi SuematsuDepartment of Internal Medicine and Rheumatology, Clinical Research Institute, Kyushu Medical Center, National Hospital Organization, Fukuoka, Fukuoka, Japan.
Shigeru OhnoCenter for Rheumatic Diseases, Yokohama City University Medical Center, Yokohama, Kanagawa, Japan.
Masao KatayamaDepartment of Internal Medicine, Nagoya Medical Center, National Hospital Organization, Nagoya, Aichi, Japan.
Hajime KonoDepartment of Internal Medicine, Teikyo University School of Medicine, Tokyo, Japan.
Shunsei HirohataDepartment of Rheumatology and Infectious Diseases, Kitasato University School of Medicine, Sagamihara, Japan.
Yoshinari TakasakiDepartment of Internal Medicine and Rheumatology, Juntendo University School of Medicine, Tokyo, Japan.
Hiroshi HashimotoJuntendo University School of Medicine, Tokyo, Japan.
Takayuki SumidaMaster's Program in Medical Sciences, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Shouhei NagaokaDepartment of Rheumatology, Yokohama Minami Kyosai Hospital, Yokohama, Kanagawa, Japan.
Shigeto TohmaClinical Research Center for Allergy and Rheumatology, Sagamihara Hospital, National Hospital Organization, Sagamihara, Kanagawa, Japan.
Hiroshi FurukawaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Naoyuki TsuchiyaMolecular and Genetic Epidemiology Laboratory, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.ORCID http://orcid.org/0000-0002-6776-5580
University of Tsukuba · JPJuntendo University · JPKitasato University · JPNational Hospital Organization · JPTokyo Metropolitan Tama Medical Center · JPYokohama City University Medical Center · JPHimeji Medical Center · JPNational Kyushu Medical Center · JPNational Sagamihara Hospital · JPTeikyo University · JPTokyo Metropolitan Komagome Hospital · JPYokohama Minami Kyosai Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HLA-G plays a role in fetal-maternal tolerance as well as immunoregulation, and has been suggested to be involved in autoimmune diseases and cancers. HLA-G encodes two potentially functional polymorphisms in the 3' untranslated region, 14bp insertion/deletion (14bp indel, rs371194629) and a single nucleotide polymorphism rs1063320, previously reported to affect HLA-G expression level or splicing isoform and to be associated with susceptibility to systemic lupus erythematosus (SLE). However, the results of SLE association studies are inconsistent, probably due to the small sample size of each study and lack of consideration of linkage disequilibrium (LD) with HLA-class II haplotypes in each population. In this study, we performed association studies of these polymorphisms on 843 patients with SLE and 778 healthy controls in a Japanese population, in many of whom HLA-DRB1 alleles have been genotyped at the four-digit level. LD was detected between DRB1*13:02, protective against multiple autoimmune diseases in the Japanese, and the rs1063320 G (D' = 0.86, r2 = 0.02) and with 14bp del (D' = 0.62, r2 = 0.01), but not between SLE-susceptible DRB1*15:01 and HLA-G. Although significant association with overall SLE was not detected, 14bp ins allele was significantly associated with SLE with the age of onset <20 years, when compared with healthy controls (P = 0.0067, PFDR = 0.039, OR 1.44, additive model) or with SLE patients with the age of onset ≥20 (P = 0.033, PFDR = 0.0495, OR 2.09, additive model). This association remained significant after conditioning on DRB1*13:02 or DRB1*15:01. On the other hand, significant association was detected between rs1063320 C and anti-RNP antibody and anti-Sm antibody positive SLE, which was dependent on negative LD with DRB1*13:02. eQTL analysis showed reduced HLA-G mRNA level in 14bp ins/ins individuals. In conclusion, our observations showed that HLA-G 14bp ins allele represents a genetic contribution on early-onset SLE independent of DRB1.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseasePolymorphism, Genetic3' Untranslated RegionsAge of OnsetAsian PeopleBase PairingCase-Control StudiesHaplotypesHLA-DRB1 ChainsHLA-G AntigensHumansINDEL MutationLinkage DisequilibriumLogistic ModelsLupus Erythematosus, Systemic3' Untranslated RegionsHLA-DRB1 ChainsHLA-G AntigensRNA, Messenger

Identifiers

PMID27331404
PMCPMC4917238
OpenAlexW2474147428

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.