Evidence map›Paper›PMID 27330999›Full record

ArticleGenomics data2016

Genome annotation of a Saccharomyces sp. lager brewer's yeast.

Patricia Marcela De León-Medina, Ramiro Elizondo-González, Luis Cástulo Damas-Buenrostro, Jan-Maarten Geertman, Marcel Van den Broek, Luis Jesús Galán-Wong, Rocío Ortiz-López, Benito Pereyra-Alférez

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Expression patterns ofApplied and environmental microbiology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Patricia Marcela De León-MedinaInstituto de Biotecnología, Facultad de Ciencias Biológicas, Universidad Autónoma de Nuevo León. Pedro de Alba y Manuel L. Barragán S/N, Ciudad Universitaria, San Nicolás de los Garza, Nuevo León 66450, Mexico; Centro de Investigación y Desarrollo en Ciencias de la Salud, Universidad Autónoma de Nuevo León, Avenida Carlos Canseco s/n esquina con Av. Gonzalitos, Mutualismo, Mitras Centro, 64460 Monterrey, Nuevo León, Mexico; Laboratorio de Investigación y Desarrollo, Cervecería Cuauhtémoc Moctezuma S.A. de C.V., Alfonso Reyes Norte Col, Bella Vista, 2202 Monterrey, Nuevo León, Mexico.
Ramiro Elizondo-GonzálezInstituto de Biotecnología, Facultad de Ciencias Biológicas, Universidad Autónoma de Nuevo León. Pedro de Alba y Manuel L. Barragán S/N, Ciudad Universitaria, San Nicolás de los Garza, Nuevo León 66450, Mexico; Centro de Investigación y Desarrollo en Ciencias de la Salud, Universidad Autónoma de Nuevo León, Avenida Carlos Canseco s/n esquina con Av. Gonzalitos, Mutualismo, Mitras Centro, 64460 Monterrey, Nuevo León, Mexico; Laboratorio de Investigación y Desarrollo, Cervecería Cuauhtémoc Moctezuma S.A. de C.V., Alfonso Reyes Norte Col, Bella Vista, 2202 Monterrey, Nuevo León, Mexico.
Luis Cástulo Damas-BuenrostroLaboratorio de Investigación y Desarrollo, Cervecería Cuauhtémoc Moctezuma S.A. de C.V., Alfonso Reyes Norte Col, Bella Vista, 2202 Monterrey, Nuevo León, Mexico.
Jan-Maarten GeertmanHeineken Supply Chain, Global Research & Development, 2382 PH Zoeterwoude, The Netherlands.
Marcel Van den BroekDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands.
Luis Jesús Galán-WongInstituto de Biotecnología, Facultad de Ciencias Biológicas, Universidad Autónoma de Nuevo León. Pedro de Alba y Manuel L. Barragán S/N, Ciudad Universitaria, San Nicolás de los Garza, Nuevo León 66450, Mexico.
Rocío Ortiz-LópezCentro de Investigación y Desarrollo en Ciencias de la Salud, Universidad Autónoma de Nuevo León, Avenida Carlos Canseco s/n esquina con Av. Gonzalitos, Mutualismo, Mitras Centro, 64460 Monterrey, Nuevo León, Mexico.
Benito Pereyra-AlférezInstituto de Biotecnología, Facultad de Ciencias Biológicas, Universidad Autónoma de Nuevo León. Pedro de Alba y Manuel L. Barragán S/N, Ciudad Universitaria, San Nicolás de los Garza, Nuevo León 66450, Mexico.
Federación de Instituciones y Organismos Financieros Rurales · MXUniversidad Autónoma de Nuevo León · MXDelft University of Technology · NLHeineken (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genome of lager brewer's yeast is a hybrid, with Saccharomyces eubayanus and Saccharomyces cerevisiae as sub-genomes. Due to their specific use in the beer industry, relatively little information is available. The genome of brewing yeast was sequenced and annotated in this study. We obtained a genome size of 22.7 Mbp that consisted of 133 scaffolds, with 65 scaffolds larger than 10 kbp. With respect to the annotation, 9939 genes were obtained, and when they were submitted to a local alignment, we found that 53.93% of these genes corresponded to S. cerevisiae, while another 42.86% originated from S. eubayanus. Our results confirm that our strain is a hybrid of at least two different genomes.

Indexed as

HybridLager beerLager yeastSaccharomyces pastorianus

Identifiers

PMID27330999
PMCPMC4909825
OpenAlexW2407265330

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.