Evidence map›Paper›PMID 27330560›Full record

ArticleBiotechnology for biofuels2016

The impact of alterations in lignin deposition on cellulose organization of the plant cell wall.

Jiliang Liu, Jeong Im Kim, Joanne C Cusumano, Clint Chapple, Nagarajan Venugopalan, Robert F Fischetti, Lee Makowski

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
10.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 44 citations in OpenAlex.

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  6. Metabolic engineering ofPlant biotechnology (Tokyo, Japan) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jiliang LiuDepartment of Bioengineering, Northeastern University, 360 Huntington Ave, Boston, MA 02148 USA.
Jeong Im KimDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, IN 47907 USA.
Joanne C CusumanoDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, IN 47907 USA.
Clint ChappleDepartment of Biochemistry, Purdue University, 175 South University Street, West Lafayette, IN 47907 USA.
Nagarajan VenugopalanGM/CA CAT, XSD, Advanced Photon Source, Argonne National Laboratory, 9700 Cass Ave, Lemont, IL 60439 USA.
Robert F FischettiGM/CA CAT, XSD, Advanced Photon Source, Argonne National Laboratory, 9700 Cass Ave, Lemont, IL 60439 USA.
Lee MakowskiDepartment of Bioengineering, Northeastern University, 360 Huntington Ave, Boston, MA 02148 USA ; Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave, Boston, MA 02148 USA.
Purdue University West Lafayette · USArgonne National Laboratory · USNortheastern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoordination of synthesis and assembly of the polymeric components of cell walls is essential for plant growth and development. Given the degree of co-mingling and cross-linking among cell wall components, cellulose organization must be dependent on the organization of other polymers such as lignin. Here we seek to identify aspects of that codependency by studying the structural organization of cellulose fibrils in stems from Arabidopsis plants harboring mutations in genes encoding enzymes involved in lignin biosynthesis. Plants containing high levels of G-lignin, S-lignin, H-lignin, aldehyde-rich lignin, and ferulic acid-containing lignin, along with plants with very low lignin content were grown and harvested and longitudinal sections of stem were prepared and dried. Scanning X-ray microdiffraction was carried out using a 5-micron beam that moved across the sections in 5-micron steps and complete diffraction patterns were collected at each raster point. Approximately, 16,000 diffraction patterns were analyzed to determine cellulose fibril orientation and order within the tissues making up the stems.

resultsSeveral mutations-most notably those exhibiting (1) down-regulation of cinnamoyl CoA reductase which leads to cell walls deficient in lignin and (2) defect of cinnamic acid 4-hydroxylase which greatly reduces lignin content-exhibited significant decrease in the proportion of oriented cellulose fibrils in the cell wall. Distinctions between tissues were maintained in all variants and even in plants exhibiting dramatic changes in cellulosic order the trends between tissues (where apparent) were generally maintained. The resilience of cellulose to degradative processes was investigated by carrying out the same analysis on samples stored in water for 30 days prior to data collection. This treatment led to significant loss of cellulosic order in plants rich in aldehyde or H-lignin, less change in wild type, and essentially no change in samples with high levels of G- or S-lignin.

conclusionsThese studies demonstrate that changes in lignin biosynthesis lead to significant disruption in the orientation and order of cellulose fibrils in all tissues of the stem. These dramatic phenotypic changes, in mutants with lignin rich in aldehyde or H-units, correlate with the impact the mutations have on the enzymatic degradation of the plant cell wall.

Indexed as

Cellulose fibrilLignin biosynthetic mutantsX-ray microdiffraction

Identifiers

PMID27330560
PMCPMC4912819
OpenAlexW2428254386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.