Evidence map›Paper›PMID 27330039›Full record

ArticleMarine genomics2017

NFAT5 genes are part of the osmotic regulatory system in Atlantic salmon (Salmo salar).

Marlene Lorgen, Even H Jorgensen, William C Jordan, Samuel A M Martin, David G Hazlerigg

Open access · hybridAbstract read
In one paragraph

Article in Marine genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Osmosensitive transcription factors in the prolactin cell of a euryhaline teleost.Comparative biochemistry and physiology. Part A, Molecular & integrative physiology · 2023
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Marlene LorgenInstitute of Biological and Environmental Sciences, University of Aberdeen, AB24 2TZ, UK.
Even H JorgensenDepartment of Arctic and Marine Biology, Faculty of BioSciences Fisheries & Economy, University of Tromsø, Norway.
William C JordanZoological Society London, Institute of Zoology, London NW1 4RY, UK.
Samuel A M MartinInstitute of Biological and Environmental Sciences, University of Aberdeen, AB24 2TZ, UK. Electronic address: sam.martin@abdn.ac.uk.
David G HazleriggDepartment of Arctic and Marine Biology, Faculty of BioSciences Fisheries & Economy, University of Tromsø, Norway.
UiT The Arctic University of Norway · NOUniversity of Aberdeen · GBZoological Society of London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H008063/1
6 · The paper itself

Abstract

The anadromous Atlantic salmon utilizes both fresh and salt water (FW and SW) habitats during its life cycle. The parr-smolt transformation (PST) is an important developmental transition from a FW adapted juvenile parr to a SW adapted smolt. Physiological changes in osmoregulatory tissues, particularly the gill, are key in maintaining effective ion regulation during PST. Changes are initiated prior to SW exposure (preparative phase), and are completed when smolts enter the sea (activational phase) where osmotic stress may directly stimulate changes in gene expression. In this paper we identify 4 nuclear factor of activated T cells (NFAT5, an osmotic stress transcription factor) paralogues in Atlantic salmon, which showed strong homology in characterized functional domains with those identified in other vertebrates. Two of the identified paralogues (NFAT5b1 and NFAT5b2) showed increased expression following transfer from FW to SW. This effect was largest in parr that were maintained under short day photoperiod, and showed the highest increases in chloride ion levels in response to SW exposure. The results of this study suggest that NFAT5 is involved in the osmotic stress response of Atlantic salmon.

Indexed as

EcosystemAnimalsFish ProteinsNFATC Transcription FactorsOsmoregulationPhylogenyRNA, MessengerSalmo salarSequence Analysis, DNASodium ChlorideFish ProteinsNFATC Transcription FactorsRNA, MessengerSodium ChlorideNuclear activated factor of T-cellsSalinitySalmonidThyroid hormoneWhole genome duplication

Identifiers

PMID27330039
PMCPMC5292104
OpenAlexW2471637770

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.