Evidence map›Paper›PMID 27329702›Full record

ArticleScientific reports2016

Sorghum Dw1, an agronomically important gene for lodging resistance, encodes a novel protein involved in cell proliferation.

Miki Yamaguchi, Haruka Fujimoto, Ko Hirano, Satoko Araki-Nakamura, Kozue Ohmae-Shinohara, Akihiro Fujii, Masako Tsunashima, Xian Jun Song, Yusuke Ito, Rie Nagae and 8 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Small Signaling Peptides inPlant direct · 2026
    Article
  3. Article
  4. Review
  5. Genomic approaches to build de novo elite breeding gene pools from locally adapted landraces.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  6. Article
  7. QTL mapping and candidate genes prediction for plant height and brix content in sorghum [Sorghum bicolor (L.) Moench].TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Novel Allelic Mutations inInternational journal of molecular sciences · 2024
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Miki YamaguchiBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Haruka FujimotoBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Ko HiranoBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Satoko Araki-NakamuraBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Kozue Ohmae-ShinoharaBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Akihiro FujiiBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Masako TsunashimaPlant Innovation Center, Japan Tobacco Inc., Iwata, Shizuoka 438-0802, Japan.
Xian Jun SongBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Yusuke ItoBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Rie NagaeBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Jianzhong WuNational Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Hiroshi MizunoNational Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Jun-Ichi YonemaruNational Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Takashi MatsumotoNational Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Hidemi KitanoBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Makoto MatsuokaBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.
Shigemitsu KasugaEducation and Research Center of Alpine Field Science, Faculty of Agriculture, Shinshu University, Minamiminowa, Nagano 399-4598, Japan.
Takashi SazukaBioscience and Biotechnology Center, Nagoya University, Furou-cho, Nagoya, Aichi 464-8601, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Semi-dwarfing genes have contributed to enhanced lodging resistance, resulting in increased crop productivity. In the history of grain sorghum breeding, the spontaneous mutation, dw1 found in Memphis in 1905, was the first widely used semi-dwarfing gene. Here, we report the identification and characterization of Dw1. We performed quantitative trait locus (QTL) analysis and cloning, and revealed that Dw1 encodes a novel uncharacterized protein. Knockdown or T-DNA insertion lines of orthologous genes in rice and Arabidopsis also showed semi-dwarfism similar to that of a nearly isogenic line (NIL) carrying dw1 (NIL-dw1) of sorghum. A histological analysis of the NIL-dw1 revealed that the longitudinal parenchymal cell lengths of the internode were almost the same between NIL-dw1 and wildtype, while the number of cells per internode was significantly reduced in NIL-dw1. NIL-dw1dw3, carrying both dw1 and dw3 (involved in auxin transport), showed a synergistic phenotype. These observations demonstrate that the dw1 reduced the cell proliferation activity in the internodes, and the synergistic effect of dw1 and dw3 contributes to improved lodging resistance and mechanical harvesting.

Indexed as

Cell ProliferationChromosome MappingCloning, MolecularPlant ProteinsQuantitative Trait LociSorghumPlant Proteins

Identifiers

PMID27329702
PMCPMC4916599

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.