ArticlePlant physiology2016
Ethylene- and Shade-Induced Hypocotyl Elongation Share Transcriptome Patterns and Functional Regulators.
Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
39 citing papers in PubMed, 66 citations in OpenAlex.
- Elongator complex differentially regulates transcription and translation in the hypocotyl and cotyledons during early light-dependent Arabidopsis development.Plant & cell physiology · 2026Article
- An ethylene-responsive element with spatial bias in Arabidopsis.Molecular biology reports · 2026Article
- The small-molecule pifithrin-α deactivates ETR1 to repress shade avoidance inScience advances · 2025Article
- Species-specific PHYTOCHROME-INTERACTING FACTOR utilization in the plant morphogenetic response to environmental stimuli.The Plant cell · 2025Article
- Lights, location, action: shade avoidance signalling over spatial scales.Journal of experimental botany · 2025Review
- Integrated Transcriptome and Proteome Analysis Revealed the Regulatory Mechanism of Hypocotyl Elongation in Pakchoi.International journal of molecular sciences · 2023Article
- Shade avoidance in the context of climate change.Plant physiology · 2023Article
- Local light signaling at the leaf tip drives remote differential petiole growth through auxin-gibberellin dynamics.Current biology : CB · 2023Article
- A combination of plasma membrane sterol biosynthesis and autophagy is required for shade-induced hypocotyl elongation.Nature communications · 2022Article
- The Role of Phytohormones in Plant Response to Flooding.International journal of molecular sciences · 2022Review
- WRKY transcription factors and ethylene signaling modify root growth during the shade-avoidance response.Plant physiology · 2022Article
- WRKYs work to limit root growth in response to shade.Plant physiology · 2022Article
- Integrated metabolomic and transcriptomic analyses reveal different metabolite biosynthesis profiles ofFrontiers in plant science · 2022Article
- Light Deficiency Inhibits Growth by Affecting Photosynthesis Efficiency as well as JA and Ethylene Signaling in Endangered PlantPlants (Basel, Switzerland) · 2021Article
- Combinations of maternal-specific repressive epigenetic marks in the endosperm control seed dormancy.eLife · 2021Article
- GENOMES UNCOUPLED1-independent retrograde signaling targets the ethylene pathway to repress photomorphogenesis.Plant physiology · 2021Article
- Photoreceptors Regulate Plant Developmental Plasticity through Auxin.Plants (Basel, Switzerland) · 2020Review
- Retrograde Induction of phyB Orchestrates Ethylene-Auxin Hierarchy to Regulate Growth.Plant physiology · 2020Article
- Ethylene signaling in plants.The Journal of biological chemistry · 2020Review
- Low-light and its effects on crop yield: Genetic and genomic implications.Journal of biosciences · 2020Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plants have evolved shoot elongation mechanisms to escape from diverse environmental stresses such as flooding and vegetative shade. The apparent similarity in growth responses suggests a possible convergence of the signaling pathways. Shoot elongation is mediated by passive ethylene accumulating to high concentrations in flooded plant organs and by changes in light quality and quantity under vegetation shade. Here, we study hypocotyl elongation as a proxy for shoot elongation and delineate Arabidopsis (Arabidopsis thaliana) hypocotyl length kinetics in response to ethylene and shade. Based on these kinetics, we further investigated ethylene- and shade-induced genome-wide gene expression changes in hypocotyls and cotyledons separately. Both treatments induced a more extensive transcriptome reconfiguration in the hypocotyls compared with the cotyledons. Bioinformatics analyses suggested contrasting regulation of growth promotion- and photosynthesis-related genes. These analyses also suggested an induction of auxin, brassinosteroid, and gibberellin signatures and the involvement of several candidate regulators in the elongating hypocotyls. Pharmacological and mutant analyses confirmed the functional involvement of several of these candidate genes and physiological control points in regulating stress-escape responses to different environmental stimuli. We discuss how these signaling networks might be integrated and conclude that plants, when facing different stresses, utilize a conserved set of transcriptionally regulated genes to modulate and fine-tune growth.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.