Evidence map›Paper›PMID 27328430›Full record

ArticleProtein science : a publication of the Protein Society2016

Structural insights into SAM domain-mediated tankyrase oligomerization.

Paul A DaRosa, Sergey Ovchinnikov, Wenqing Xu, Rachel E Klevit

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Sticky, Adaptable, and Many-sided: SAM protein versatility in normal and pathological hematopoietic states.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Research Progress on PARP14 as a Drug Target.Frontiers in pharmacology · 2019
    Review
  11. Review
  12. Regulation of tankyrase activity by a catalytic domain dimer interface.Biochemical and biophysical research communications · 2018
    Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Paul A DaRosaDepartment of Biochemistry, University of Washington, Seattle, Washington, 98195.
Sergey OvchinnikovDepartment of Biochemistry, University of Washington, Seattle, Washington, 98195.
Wenqing XuDepartment of Biological Structure, University of Washington, Seattle, Washington, 98195.
Rachel E KlevitDepartment of Biochemistry, University of Washington, Seattle, Washington, 98195.

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
High resolution structure modeling with RosettaR01GM092802 · NIGMS · UNIVERSITY OF WASHINGTON · PI BAKER, DAVID · 2010 to 2017
$2.3M
Structural and biochemical studies of protein PARylation and PARylation-dependentR01GM099766 · NIGMS · UNIVERSITY OF WASHINGTON · PI XU, WENQING · 2012 to 2015
$1.1M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM092802NIGMS NIH HHS R01 GM099766NIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

Tankyrase 1 (TNKS1; a.k.a. ARTD5) and tankyrase 2 (TNKS2; a.k.a ARTD6) are highly homologous poly(ADP-ribose) polymerases (PARPs) that function in a wide variety of cellular processes including Wnt signaling, Src signaling, Akt signaling, Glut4 vesicle translocation, telomere length regulation, and centriole and spindle pole maturation. Tankyrase proteins include a sterile alpha motif (SAM) domain that undergoes oligomerization in vitro and in vivo. However, the SAM domains of TNKS1 and TNKS2 have not been structurally characterized and the mode of oligomerization is not yet defined. Here we model the SAM domain-mediated oligomerization of tankyrase. The structural model, supported by mutagenesis and NMR analysis, demonstrates a helical, homotypic head-to-tail polymer that facilitates TNKS self-association. Furthermore, we show that TNKS1 and TNKS2 can form (TNKS1 SAM-TNKS2 SAM) hetero-oligomeric structures mediated by their SAM domains. Though wild-type tankyrase proteins have very low solubility, model-based mutations of the SAM oligomerization interface residues allowed us to obtain soluble TNKS proteins. These structural insights will be invaluable for the functional and biophysical characterization of TNKS1/2, including the role of TNKS oligomerization in protein poly(ADP-ribosyl)ation (PARylation) and PARylation-dependent ubiquitylation.

Indexed as

Protein MultimerizationAnimalsHumansMiceProtein DomainsProtein Structure, SecondaryTankyrasestankyrase-2, mouseTankyrasesTNKS2 protein, humanTNKS protein, humanTnks protein, mousemolecular modeloligomerizationPARPPARP5PARylationprotein poly(ADP-ribosyl)ationSAMsterile alpha motiftankyrase

Identifiers

PMID27328430
PMCPMC5338228

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.