Evidence map›Paper›PMID 27327897›Full record

ArticlePloS one2016

Dissociation Dynamics of XPC-RAD23B from Damaged DNA Is a Determining Factor of NER Efficiency.

Benjamin Hilton, Sathyaraj Gopal, Lifang Xu, Sharmistha Mazumder, Phillip R Musich, Bongsup P Cho, Yue Zou

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  6. Repair-Resistant DNA Lesions.Chemical research in toxicology · 2017
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Benjamin HiltonDepartment of Biomedical Sciences, Quillen College of Medicine, East Tennessee State University, Johnson City, Tennessee, 37614, United States of America.
Sathyaraj GopalDepartment of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, Kingston, Rhode Island, 02881, United States of America.
Lifang XuDepartment of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, Kingston, Rhode Island, 02881, United States of America.
Sharmistha MazumderDepartment of Biomedical Sciences, Quillen College of Medicine, East Tennessee State University, Johnson City, Tennessee, 37614, United States of America.
Phillip R MusichDepartment of Biomedical Sciences, Quillen College of Medicine, East Tennessee State University, Johnson City, Tennessee, 37614, United States of America.
Bongsup P ChoDepartment of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, Kingston, Rhode Island, 02881, United States of America.
Yue ZouDepartment of Biomedical Sciences, Quillen College of Medicine, East Tennessee State University, Johnson City, Tennessee, 37614, United States of America.
East Tennessee State University · USUniversity of Rhode Island · US

Funding

Sequence Effects of Arylamine-DNA Adducts: Repair and ReplicationR01CA098296 · NCI · UNIVERSITY OF RHODE ISLAND · PI CHO, BONGSUP P · 2003 to 2013
$2.6M
RECOGNITION AND REPAIR OF UV DAMAGE TO HUMAN DNAR01CA086927 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ZOU, YUE · 2000 to 2011
$2.2M
Antiapoptotic Role of Ataxia Telangiectasia and Rad3-RelatedR15GM112168 · NIGMS · EAST TENNESSEE STATE UNIVERSITY · PI ZOU, YUE · 2014 to 2016
$422k
Sequence Effects of Arylamine-DNA Adducts: Repair and ReplicationR56CA098296 · NCI · UNIVERSITY OF RHODE ISLAND · PI CHO, BONGSUP P · 2008 to 2008
$300k
Checkpoint Signaling and Repair of UV Damage to Human DNAR56CA086927 · NCI · EAST TENNESSEE STATE UNIVERSITY · PI ZOU, YUE · 2007 to 2007
$231k
NCI NIH HHS R01 CA086927NCI NIH HHS R01 CA098296NCI NIH HHS R56 CA086927NCI NIH HHS R56 CA098296NIGMS NIH HHS R15 GM112168
6 · The paper itself

Abstract

XPC-RAD23B (XPC) plays a critical role in human nucleotide excision repair (hNER) as this complex recognizes DNA adducts to initiate NER. To determine the mutagenic potential of structurally different bulky DNA damages, various studies have been conducted to define the correlation of XPC-DNA damage equilibrium binding affinity with NER efficiency. However, little is known about the effects of XPC-DNA damage recognition kinetics on hNER. Although association of XPC is important, our current work shows that the XPC-DNA dissociation rate also plays a pivotal role in achieving NER efficiency. We characterized for the first time the binding of XPC to mono- versus di-AAF-modified sequences by using the real time monitoring surface plasmon resonance technique. Strikingly, the half-life (t1/2 or the retention time of XPC in association with damaged DNA) shares an inverse relationship with NER efficiency. This is particularly true when XPC remained bound to clustered adducts for a much longer period of time as compared to mono-adducts. Our results suggest that XPC dissociation from the damage site could become a rate-limiting step in NER of certain types of DNA adducts, leading to repression of NER.

Indexed as

DNA DamageDNA RepairAdenosine TriphosphatasesBase SequenceDNADNA AdductsDNA-Binding ProteinsDNA Repair EnzymesEscherichia coliEscherichia coli ProteinsHalf-LifeHeLa CellsHumansModels, BiologicalNucleic Acid DenaturationProtein BindingAdenosine TriphosphatasesDNADNA AdductsDNA-Binding ProteinsDNA Repair EnzymesEscherichia coli ProteinsRAD23B protein, humanUvrA protein, E coliXPC protein, human

Identifiers

PMID27327897
PMCPMC4915676
OpenAlexW2467593653

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.