Evidence map›Paper›PMID 27325746›Full record

ArticleNucleic acids research2016

eIF1A/eIF5B interaction network and its functions in translation initiation complex assembly and remodeling.

Nabanita Nag, Kai Ying Lin, Katherine A Edmonds, Jielin Yu, Devika Nadkarni, Boriana Marintcheva, Assen Marintchev

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  4. CriticalNAR genomics and bioinformatics · 2024
    Article
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  7. Article
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  16. Protein Synthesis Initiation in Eukaryotic Cells.Cold Spring Harbor perspectives in biology · 2018
    Review
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nabanita NagBoston University School of Medicine, Department of Physiology and Biophysics, Boston, MA 02118, USA.
Kai Ying LinBoston University School of Medicine, Department of Physiology and Biophysics, Boston, MA 02118, USA.
Katherine A EdmondsIndiana University, Department of Chemistry, Bloomington, IN 47405, USA.
Jielin YuBoston University School of Medicine, Department of Physiology and Biophysics, Boston, MA 02118, USA.
Devika NadkarniBoston University School of Medicine, Department of Physiology and Biophysics, Boston, MA 02118, USA.
Boriana MarintchevaBridgewater State University, Department of Biological Sciences, Bridgewater, MA 02325, USA.
Assen MarintchevBoston University School of Medicine, Department of Physiology and Biophysics, Boston, MA 02118, USA amarint@bu.edu.
Boston University · USBridgewater State University · USIndiana University Bloomington · US

Funding

Mechanisms of assembly and remodeling of human translation initiation complexesR01GM095720 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MARINTCHEV, ASSEN G · 2011 to 2015
$1.5M
A Console Upgrade and Cryogenic Probe for a 500 MHz NMR System for Biomedical ResS10OD011941 · OD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MCKNIGHT, CHRISTOPHER JAMES · 2013 to 2013
$596k
NIGMS NIH HHS R01 GM095720NIH HHS S10 OD011941
6 · The paper itself

Abstract

Eukaryotic translation initiation is a highly regulated process involving multiple steps, from 43S pre-initiation complex (PIC) assembly, to ribosomal subunit joining. Subunit joining is controlled by the G-protein eukaryotic translation initiation factor 5B (eIF5B). Another protein, eIF1A, is involved in virtually all steps, including subunit joining. The intrinsically disordered eIF1A C-terminal tail (eIF1A-CTT) binds to eIF5B Domain-4 (eIF5B-D4). The ribosomal complex undergoes conformational rearrangements at every step of translation initiation; however, the underlying molecular mechanisms are poorly understood. Here we report three novel interactions involving eIF5B and eIF1A: (i) a second binding interface between eIF5B and eIF1A; (ii) a dynamic intramolecular interaction in eIF1A between the folded domain and eIF1A-CTT; and (iii) an intramolecular interaction between eIF5B-D3 and -D4. The intramolecular interactions within eIF1A and eIF5B interfere with one or both eIF5B/eIF1A contact interfaces, but are disrupted on the ribosome at different stages of translation initiation. Therefore, our results indicate that the interactions between eIF1A and eIF5B are being continuously rearranged during translation initiation. We present a model how the dynamic eIF1A/eIF5B interaction network can promote remodeling of the translation initiation complexes, and the roles in the process played by intrinsically disordered protein segments.

Indexed as

Binding SitesEukaryotic Initiation Factor-1Eukaryotic Initiation FactorsHumansModels, BiologicalModels, MolecularMultiprotein ComplexesPeptide Chain Initiation, TranslationalProtein BindingProtein DomainsRibosomesSolutionsEukaryotic Initiation Factor-1eukaryotic initiation factor-5BEukaryotic Initiation Factorseukaryotic peptide initiation factor-1AMultiprotein ComplexesSolutions

Identifiers

PMID27325746
PMCPMC5009744
OpenAlexW2470303684

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.