Evidence map›Paper›PMID 27325650›Full record

ArticleCancer research2016

CSN1 Somatic Mutations in Penile Squamous Cell Carcinoma.

Andrew Feber, Daniel C Worth, Ankur Chakravarthy, Patricia de Winter, Kunal Shah, Manit Arya, Muhammad Saqib, Raj Nigam, Peter R Malone, Wei Shen Tan and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Bioinformatics analysis of GPS1 expression and biological function in breast cancer.Journal of cancer research and clinical oncology · 2024
    Article
  10. Review
  11. Article
  12. Article
  13. Penile cancer: Updates in systemic therapy.Asian journal of urology · 2022
    Review
  14. Review
  15. Immune-based therapies in penile cancer.Nature reviews. Urology · 2022
    Review
  16. Article
  17. Article
  18. Upregulated miRNAs on theFrontiers in genetics · 2022
    Article
  19. Emerging Therapies in Penile Cancer.Frontiers in oncology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 1 country.

Andrew FeberUCL Cancer Institute, University College London, London, United Kingdom.
Daniel C Worth *Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, London, United Kingdom.
Ankur Chakravarthy *UCL Cancer Institute, University College London, London, United Kingdom.
Patricia de WinterDivision of Surgery and Interventional Science, UCL Medical School, University College London, London, United Kingdom.
Kunal ShahCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, London, United Kingdom.
Manit AryaCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, London, United Kingdom.
Muhammad SaqibDepartment of Urology, University College Hospital, London, United Kingdom.
Raj NigamDepartment of Urology, The Royal Surrey County Hospital, Surrey, United Kingdom.
Peter R MaloneDepartment of Urology, The Royal Berkshire NHS Foundation Trust, Reading, United Kingdom.
Wei Shen TanDivision of Surgery and Interventional Science, UCL Medical School, University College London, London, United Kingdom.
Simon RodneyDivision of Surgery and Interventional Science, UCL Medical School, University College London, London, United Kingdom.
Alex FreemanDepartment of Histopathology, University College London Hospital, London, United Kingdom.
Charles JamesonDepartment of Histopathology, University College London Hospital, London, United Kingdom.
Gareth A WilsonUCL Cancer Institute, University College London, London, United Kingdom.
Tom PowlesExperimental Cancer Medicine Centre, Barts Cancer Institute, Barts Health and the Royal Free NHS Trust, Queen Mary University of London, London, United Kingdom.
Stephan BeckUCL Cancer Institute, University College London, London, United Kingdom.
Tim FentonUCL Cancer Institute, University College London, London, United Kingdom.
Tyson V SharpCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, London, United Kingdom.
Asif MuneerDepartment of Urology, University College Hospital, London, United Kingdom.
John D KellyDivision of Surgery and Interventional Science, UCL Medical School, University College London, London, United Kingdom.
CRUK Lung Cancer Centre of Excellence · GBUniversity College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F006470/1Biotechnology and Biological Sciences Research Council BB/I007571/2Cancer Research UK 12733Medical Research Council G100041Medical Research Council MR/M025411/1Wellcome Trust 077019Wellcome Trust 084071Wellcome Trust 099148Wellcome Trust WT093855
6 · The paper itself

Abstract

Other than an association with HPV infection, little is known about the genetic alterations determining the development of penile cancer. Although penile cancer is rare in the developed world, it presents a significant burden in developing countries. Here, we report the findings of whole-exome sequencing (WES) to determine the somatic mutational landscape of penile cancer. WES was performed on penile cancer and matched germline DNA from 27 patients undergoing surgical resection. Targeted resequencing of candidate genes was performed in an independent 70 patient cohort. Mutation data were also integrated with DNA methylation and copy-number information from the same patients. We identified an HPV-associated APOBEC mutation signature and an NpCpG signature in HPV-negative disease. We also identified recurrent mutations in the novel penile cancer tumor suppressor genes CSN1(GPS1) and FAT1 Expression of CSN1 mutants in cells resulted in colocalization with AGO2 in cytoplasmic P-bodies, ultimately leading to the loss of miRNA-mediated gene silencing, which may contribute to disease etiology. Our findings represent the first comprehensive analysis of somatic alterations in penile cancer, highlighting the complex landscape of alterations in this malignancy. Cancer Res; 76(16); 4720-7. ©2016 AACR.

Indexed as

CadherinsCarcinoma, Squamous CellCOP9 Signalosome ComplexDNA Copy Number VariationsDNA MethylationDNA Mutational AnalysisFluorescent Antibody TechniqueHumansIntracellular Signaling Peptides and ProteinsMaleMutationPenile NeoplasmsPolymerase Chain ReactionCadherinsCOP9 Signalosome ComplexFAT1 protein, humanGPS1 protein, humanIntracellular Signaling Peptides and Proteins

Identifiers

PMID27325650
PMCPMC5302160
OpenAlexW2461310113

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.