Evidence map›Paper›PMID 27325503›Full record

ArticleAnalytical biochemistry2016

Microwave-accelerated method for ultra-rapid extraction of Neisseria gonorrhoeae DNA for downstream detection.

Johan H Melendez, Tonya M Santaus, Gregory Brinsley, Daniel Kiang, Buddha Mali, Justin Hardick, Charlotte A Gaydos, Chris D Geddes

Open access · greenAbstract read
In one paragraph

Article in Analytical biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Johan H MelendezInstitute of Fluorescence and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21202, USA.
Tonya M SantausInstitute of Fluorescence and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21202, USA.
Gregory BrinsleyInstitute of Fluorescence and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21202, USA.
Daniel KiangInstitute of Fluorescence and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21202, USA.
Buddha MaliInstitute of Fluorescence and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21202, USA.
Justin HardickThe Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA.
Charlotte A GaydosThe Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA.
Chris D GeddesInstitute of Fluorescence and Department of Chemistry and Biochemistry, University of Maryland Baltimore County, Baltimore, MD 21202, USA. Electronic address: geddes@umbc.edu.
University of Maryland, Baltimore County · USJohns Hopkins University · US

Funding

TrainingU54EB007958 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI Matthew Hamill · 2007 to 2026
$34.6M
EXPAND PARTICIPATION BY MINORITIES IN BIOMEDICAL SCIENCER25GM055036 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SUMMERS, MICHAEL FINLEY · 1996 to 2021
$16.9M
Graduate Training at The Chemistry Biology InterfaceT32GM066706 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SELEY-RADTKE, KATHERINE L, SMITH, AARON T · 2004 to 2023
$3.3M
Microwave-Accelerated Metal Enhanced Fluorescence (MAMEF) of CT and GCR03AI117272 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI GAYDOS, CHARLOTTE ANN, GEDDES, CHRISTOPHER DARREN · 2015 to 2016
$179k
NIAID NIH HHS R03 AI117272NIBIB NIH HHS U54 EB007958NIGMS NIH HHS R25 GM055036NIGMS NIH HHS T32 GM066706
6 · The paper itself

Abstract

Nucleic acid-based detection of gonorrhea infections typically require a two-step process involving isolation of the nucleic acid, followed by detection of the genomic target often involving polymerase chain reaction (PCR)-based approaches. In an effort to improve on current detection approaches, we have developed a unique two-step microwave-accelerated approach for rapid extraction and detection of Neisseria gonorrhoeae (gonorrhea, GC) DNA. Our approach is based on the use of highly focused microwave radiation to rapidly lyse bacterial cells, release, and subsequently fragment microbial DNA. The DNA target is then detected by a process known as microwave-accelerated metal-enhanced fluorescence (MAMEF), an ultra-sensitive direct DNA detection analytical technique. In the current study, we show that highly focused microwaves at 2.45 GHz, using 12.3-mm gold film equilateral triangles, are able to rapidly lyse both bacteria cells and fragment DNA in a time- and microwave power-dependent manner. Detection of the extracted DNA can be performed by MAMEF, without the need for DNA amplification, in less than 10 min total time or by other PCR-based approaches. Collectively, the use of a microwave-accelerated method for the release and detection of DNA represents a significant step forward toward the development of a point-of-care (POC) platform for detection of gonorrhea infections.

Indexed as

DNA, BacterialMicrowavesNeisseria gonorrhoeaeDNA, BacterialDNA extractionDNA fragmentationGonorrheaMicrowave-accelerated metal-enhanced fluorescenceMicrowavesNeisseria gonorrhoeae

Identifiers

PMID27325503
PMCPMC5120674
OpenAlexW2461440960

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.