Evidence map›Paper›PMID 27322910›Full record

ArticleJournal of proteome research2016

Discovery of Manassantin A Protein Targets Using Large-Scale Protein Folding and Stability Measurements.

M Ariel Geer Wallace, Do-Yeon Kwon, Douglas H Weitzel, Chen-Ting Lee, Tesia N Stephenson, Jen-Tsan Chi, Robert A Mook, Mark W Dewhirst, Jiyong Hong, Michael C Fitzgerald

Abstract read
In one paragraph

Article in Journal of proteome research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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  11. The Knowns and Unknowns in Protein-Metabolite Interactions.International journal of molecular sciences · 2023
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  14. Chemoproteomics for Plasmodium Parasite Drug Target Discovery.Chembiochem : a European journal of chemical biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

M Ariel Geer WallaceDepartment of Chemistry, Duke University , Durham, North Carolina 27708-0346, United States.
Do-Yeon KwonDepartment of Chemistry, Duke University , Durham, North Carolina 27708-0346, United States.
Douglas H Weitzel
Chen-Ting Lee
Tesia N StephensonDepartment of Chemistry, Duke University , Durham, North Carolina 27708-0346, United States.
Jen-Tsan Chi
Robert A Mook
Mark W Dewhirst
Jiyong HongDepartment of Chemistry, Duke University , Durham, North Carolina 27708-0346, United States.
Michael C FitzgeraldDepartment of Chemistry, Duke University , Durham, North Carolina 27708-0346, United States.
Duke University · US

Funding

Analysis of Protein-Ligand Binding on the Proteomic ScaleR01GM084174 · NIGMS · DUKE UNIVERSITY · PI FITZGERALD, MICHAEL C · 2009 to 2017
$2.6M
NIGMS NIH HHS R01 GM084174
6 · The paper itself

Abstract

Manassantin A is a natural product that has been shown to have anticancer activity in cell-based assays, but has a largely unknown mode-of-action. Described here is the use of two different energetics-based approaches to identify protein targets of manassantin A. Using the stability of proteins from rates of oxidation technique with an isobaric mass tagging strategy (iTRAQ-SPROX) and the pulse proteolysis technique with a stable isotope labeling with amino acids in cell culture strategy (SILAC-PP), over 1000 proteins in a MDA-MB-231 cell lysate grown under hypoxic conditions were assayed for manassantin A interactions (both direct and indirect). A total of 28 protein hits were identified with manassantin A-induced thermodynamic stability changes. Two of the protein hits (filamin A and elongation factor 1α) were identified using both experimental approaches. The remaining 26 hit proteins were only assayed in either the iTRAQ-SPROX or the SILAC-PP experiment. The 28 potential protein targets of manassantin A identified here provide new experimental avenues along which to explore the molecular basis of manassantin A's mode of action. The current work also represents the first application iTRAQ-SPROX and SILAC-PP to the large-scale analysis of protein-ligand binding interactions involving a potential anticancer drug with an unknown mode-of-action.

Indexed as

Protein FoldingProtein StabilityAntineoplastic AgentsBiological ProductsCells, CulturedFilaminsHumansIsotope LabelingLigandsLignansOxidation-ReductionPeptide Elongation Factor 1Protein BindingSaururaceaeAntineoplastic AgentsBiological ProductsFilaminsLigandsLignansmanassantin APeptide Elongation Factor 1cancerchemical denaturationelongation factor 1αFilamin AiTRAQManassantin Amass spectrometryMDA-MB-231mode-of-actionproteomicspulse proteolysisSILACSPROX

Identifiers

PMID27322910
PMCPMC5270646
OpenAlexW2470429277

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.