Evidence map›Paper›PMID 27322684›Full record

ArticleOncotarget2016

PRAME expression and promoter hypomethylation in epithelial ovarian cancer.

Wa Zhang, Carter J Barger, Kevin H Eng, David Klinkebiel, Petra A Link, Angela Omilian, Wiam Bshara, Kunle Odunsi, Adam R Karpf

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 2 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 2 syntheses or guidelines pooled it, 98 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. PRAME Expression in Melanoma is Negatively Regulated by TET2-Mediated DNA Hydroxymethylation.Laboratory investigation; a journal of technical methods and pathology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Immunohistochemical expression of PRAME in 485 cases of epithelial tubo-ovarian tumors.Virchows Archiv : an international journal of pathology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Wa ZhangEppley Institute for Cancer Research, University of Nebraska Medical Center, Omaha, NE, USA.
Carter J BargerEppley Institute for Cancer Research, University of Nebraska Medical Center, Omaha, NE, USA.
Kevin H EngDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, USA.
David KlinkebielDepartment of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA.
Petra A LinkDepartment of Pharmacology, Roswell Park Cancer Institute, Buffalo, NY, USA.
Angela OmilianDepartment of Pathology, Roswell Park Cancer Institute, Buffalo, NY, USA.
Wiam BsharaDepartment of Pathology, Roswell Park Cancer Institute, Buffalo, NY, USA.
Kunle OdunsiDepartment of Gynecologic Oncology, Roswell Park Cancer Institute, Buffalo, NY, USA.
Adam R KarpfEppley Institute for Cancer Research, University of Nebraska Medical Center, Omaha, NE, USA.
Roswell Park Comprehensive Cancer Center · USUniversity of Nebraska Medical Center · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Dean G. Tang · 1985 to 2026
$116.6M
UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Joann B. Sweasy · 1985 to 2026
$55.0M
RPCI-UPCI Ovarian Cancer SPOREP50CA159981 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MOYSICH, KIRSTEN B., ODUNSI, KUNLE · 2013 to 2025
$19.6M
CHEMICAL CARCINOGENESIS &CANCER BIOLOGYT32CA009476 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Jennifer D. Black · 1988 to 2026
$6.2M
mTOR inhibition for generating memory T cells to enhance ovarian tumor immunityR01CA158318 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI ODUNSI, KUNLE, SHRIKANT, PROTUL · 2011 to 2015
$1.7M
Informatic Methods for Differential Signaling and Immune Co-Regulatory ExpressionK01LM012100 · NLM · ROSWELL PARK CANCER INSTITUTE CORP · PI ENG, KEVIN HASEGAWA · 2015 to 2017
$502k
NCI NIH HHS P30 CA016056NCI NIH HHS P30 CA036727NCI NIH HHS P50 CA159981NCI NIH HHS R01 CA158318NCI NIH HHS T32 CA009476NLM NIH HHS K01 LM012100
6 · The paper itself

Abstract

PRAME is a cancer-testis antigen (CTA) and potential immuno-therapeutic target, but has not been well-studied in epithelial ovarian cancer (EOC) or its high grade serous (HGSC) subtype. Compared to normal ovary, PRAME expression was significantly increased most EOC, regardless of stage and grade. Interestingly, PRAME mRNA expression was associated with improved survival in the HGSC subtype. The PRAME locus was a frequent target for copy number alterations (CNA) in HGSC but most changes were heterozygous losses, indicating that elevated PRAME expression is not typically due to CNA. In contrast, PRAME promoter DNA hypomethylation was very common in EOC and HGSC and correlated with increased PRAME expression. PRAME expression and promoter hypomethylation both correlated with LINE-1 hypomethylation, a biomarker of global DNA hypomethylation. Pharmacologic or genetic disruption of DNA methyltransferase (DNMT) enzymes activated PRAME expression in EOC cells. Immunohistochemistry (IHC) of PRAME in EOC revealed frequent, but low level, protein expression, and expression was confined to epithelial cells and localized to the cytoplasm. Cytoplasmic PRAME expression was positively associated with PRAME mRNA expression and negatively associated with promoter methylation, but the latter correlation was not statistically significant. PRAME protein expression did not correlate with EOC clinicopathology or survival. In summary, PRAME is frequently expressed in EOC at the mRNA and protein levels, and DNA methylation is a key mechanism regulating its expression. These data support PRAME as an immunotherapy target in EOC, and suggest treatment with DNMT inhibitors as a means to augment PRAME immunotherapy.

Indexed as

DNA MethylationPromoter Regions, GeneticAntigens, NeoplasmCarcinoma, Ovarian EpithelialCell Line, TumorDNA (Cytosine-5-)-Methyltransferase 1FemaleGene DosageHumansMiddle AgedNeoplasms, Glandular and EpithelialOvarian NeoplasmsRNA, MessengerAntigens, NeoplasmDNA (Cytosine-5-)-Methyltransferase 1PRAME protein, humanRNA, Messengercancer testis antigensDNA methylationepithelial ovarian cancerhigh grade serous cancerPRAME

Identifiers

PMID27322684
PMCPMC5216727
OpenAlexW2434899782

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.