ArticleNature genetics2016
Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.
Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 377 papers.
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Who cites it
377 citing papers in PubMed, 688 citations in OpenAlex.
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- Genetic dissection of a key dynamic growth period QTL for source-sink-related traits and its breeding application potential in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genotypic Characterization and Evaluation ofCurrent issues in molecular biology · 2026Article
- Dissecting Agronomically favorable genotypes in temperate japonica rice via haplotype analysis of a Japan-MAGIC population.The Plant journal : for cell and molecular biology · 2026Article
- Genome-wide association analysis and molecular marker development for effective tiller number in rice natural population.BMC plant biology · 2026Article
- Multi-locus GWAS to unravel the genetic architecture of grain iron, zinc and protein contents in wheat (Triticum aestivum L.) genotypes evaluated over multiple locations and years.BMC plant biology · 2026Article
- Identification of candidate genes for deep-sowing tolerance in rice by genome-wide association study and transcriptome sequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Large scale wheat data integration improves genomic prediction accuracy with the potential to facilitate international breeding collaborations.Communications biology · 2026Article
- RNA Tailing by Nucleotidyltransferases in Plants: Mechanisms, Functions, and Biological Significance.Plants (Basel, Switzerland) · 2026Review
- Genomics in wheat improvement: Progress and perspectives.The plant genome · 2026Review
- Unraveling the Genetic Architecture of Photoperiod Sensitivity in Myanmar Rice Landraces Through Integrated GWAS and Transcriptome Analysis.International journal of molecular sciences · 2026Article
- Blast Resistance Gene Pish Derived Reprogramming of Noncoding RNAs in Rice.Rice (New York, N.Y.) · 2026Article
- Genome-Wide Association and Transcriptome Analyses Identify OsCBP606 as a Calmodulin-Mediated Susceptibility Gene to Magnaporthe oryzae in Rice.Rice (New York, N.Y.) · 2026Article
- A genome-wide association analysis identifies a key candidate gene controlling plant growth habit in chickpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genomic selection for tar content inFrontiers in plant science · 2026Article
- Genomic Variation and GWAS Analysis for Salt Tolerance Discovered in Egyptian Rice Germplasm.Plants (Basel, Switzerland) · 2026Article
317 more citing papers are in PubMed but not listed here.
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Authors and funding
11 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A genome-wide association study (GWAS) can be a powerful tool for the identification of genes associated with agronomic traits in crop species, but it is often hindered by population structure and the large extent of linkage disequilibrium. In this study, we identified agronomically important genes in rice using GWAS based on whole-genome sequencing, followed by the screening of candidate genes based on the estimated effect of nucleotide polymorphisms. Using this approach, we identified four new genes associated with agronomic traits. Some genes were undetectable by standard SNP analysis, but we detected them using gene-based association analysis. This study provides fundamental insights relevant to the rapid identification of genes associated with agronomic traits using GWAS and will accelerate future efforts aimed at crop improvement.
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