Evidence map›Paper›PMID 27320406›Full record

ArticleScientific reports2016

Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin.

Shivangi Sachdeva, Narendar Kolimi, Sanjana Anilkumar Nair, Thenmalarchelvi Rathinavelan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Targeting the Sugary Armor ofFrontiers in cellular and infection microbiology · 2019
    Review
  5. Frontiers in microbiology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shivangi SachdevaDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Telangana State 502285, India.
Narendar KolimiDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Telangana State 502285, India.
Sanjana Anilkumar NairDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Telangana State 502285, India.
Thenmalarchelvi RathinavelanDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Telangana State 502285, India.
Indian Institute of Technology Hyderabad · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Capsular polysaccharides (CPSs) are major bacterial virulent determinants that facilitate host immune evasion. E. coli group1 K30CPS is noncovalently attached to bacterial surface by Wzi, a lectin. Intriguingly, structure based phylogenetic analysis indicates that Wzi falls into porin superfamily. Molecular dynamics (MD) simulations further shed light on dual role of Wzi as it also functions as a bidirectional passive water specific porin. Such a functional role of Wzi was not realized earlier, due to the occluded pore. While five water specific entry points distributed across extracellular &periplasmic faces regulate the water diffusion involving different mechanisms, a luminal hydrophobic plug governs water permeation across the channel. Coincidently, MD observed open state structure of "YQF" triad is seen in sugar-binding site of sodium-galactose cotransporters, implicating its involvement in K30CPS surface anchorage. Importance of Loop 5 (L5) in membrane insertion is yet another highlight. Change in water diffusion pattern of periplasmic substitution mutants suggests Wzi's role in osmoregulation by aiding in K30CPS hydration, corroborating earlier functional studies. Water molecules located inside β-barrel of Wzi crystal structure further strengthens the role of Wzi in osmoregulation. Thus, interrupting water diffusion or L5 insertion may reduce bacterial virulence.

Indexed as

AquaporinsBacterial CapsulesBacterial Outer Membrane ProteinsCrystallography, X-RayEscherichia coliEscherichia coli ProteinsHydrophobic and Hydrophilic InteractionsModels, MolecularMolecular Dynamics SimulationOsmoregulationProtein ConformationWaterAquaporinsBacterial Outer Membrane ProteinsEscherichia coli ProteinsWaterWzi protein, E coli

Identifiers

PMID27320406
PMCPMC4913347
OpenAlexW2471611259

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.