Evidence map›Paper›PMID 27320083›Full record

ArticleThe journal of physical chemistry letters2016

Saccharides as Prospective Immobilizers of Nucleic Acids for Room-Temperature Structural EPR Studies.

Andrey A Kuzhelev, Georgiy Yu Shevelev, Olesya A Krumkacheva, Victor M Tormyshev, Dmitrii V Pyshnyi, Matvey V Fedin, Elena G Bagryanskaya

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. In-Cell Trityl-Trityl Distance Measurements on Proteins.The journal of physical chemistry letters · 2020
    Article
  3. Article
  4. Triarylmethyl Radicals: EPR Study ofZeitschrift fur physikalische Chemie (Frankfurt am Main, Germany) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Andrey A KuzhelevN.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry SB RAS , Novosibirsk 630090, Russia.
Georgiy Yu ShevelevInstitute of Chemical Biology and Fundamental Medicine SB RAS , Novosibirsk 630090, Russia.
Olesya A KrumkachevaInternational Tomography Center SB RAS , Novosibirsk 630090, Russia.
Victor M TormyshevN.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry SB RAS , Novosibirsk 630090, Russia.
Dmitrii V PyshnyiInstitute of Chemical Biology and Fundamental Medicine SB RAS , Novosibirsk 630090, Russia.
Matvey V FedinInternational Tomography Center SB RAS , Novosibirsk 630090, Russia.
Elena G BagryanskayaN.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry SB RAS , Novosibirsk 630090, Russia.
Novosibirsk State University · RUInstitute of Chemical Biology and Fundamental Medicine · RUInternational Tomography Center · RUNovosibirsk Institute of Organic Chemistry · RUSiberian Branch of the Russian Academy of Sciences · RU

Funding

Very Low Frequency EPR Imaging in Vivo Phisiology P41 EB02034P41EB002034 · NIBIB · UNIVERSITY OF CHICAGO · PI HALPERN, HOWARD J · 2003 to 2017
$16.1M
Radiation Biology of EPR Oxygen ImagesR01CA098575 · NCI · UNIVERSITY OF CHICAGO · PI HALPERN, HOWARD J · 2003 to 2022
$4.5M
NCI NIH HHS R01 CA098575NIBIB NIH HHS P41 EB002034
6 · The paper itself

Abstract

Pulsed dipolar electron paramagnetic resonance (EPR) spectroscopy is a powerful tool for structural studies of biomolecules and their complexes. This method, whose applicability has been recently extended to room temperatures, requires immobilization of the studied biosystem to prevent averaging of dipolar couplings; at the same time, the modification of native conformations by immobilization must be avoided. In this work, we provide first demonstration of room-temperature EPR distance measurements in nucleic acids using saccharides trehalose, sucrose, and glucose as immobilizing media. We propose an approach that keeps structural conformation and unity of immobilized double-stranded DNA. Remarkably, room-temperature electron spin dephasing time of triarylmethyl-labeled DNA in trehalose is noticeably longer compared to previously used immobilizers, thus providing a broader range of available distances. Therefore, saccharides, and especially trehalose, can be efficiently used as immobilizers of nucleic acids, mimicking native conditions and allowing wide range of structural EPR studies at room temperatures.

Identifiers

PMID27320083
PMCPMC5453311
OpenAlexW2426989173

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.