Evidence map›Paper›PMID 27318801›Full record

ArticleCancer medicine2016

Transcriptome profiling reveals novel gene expression signatures and regulating transcription factors of TGFβ-induced epithelial-to-mesenchymal transition.

Liutao Du, Shota Yamamoto, Barry L Burnette, Danshang Huang, Kun Gao, Neema Jamshidi, Michael D Kuo

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

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  10. A primer to traction force microscopy.The Journal of biological chemistry · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Liutao DuDepartment of Radiology, The David Geffen School of Medicine at UCLA, Los Angeles, California, 90095.
Shota YamamotoDepartment of Radiology, The David Geffen School of Medicine at UCLA, Los Angeles, California, 90095.
Barry L BurnetteDepartment of Radiology, The David Geffen School of Medicine at UCLA, Los Angeles, California, 90095.
Danshang HuangDepartment of Radiology, The David Geffen School of Medicine at UCLA, Los Angeles, California, 90095.
Kun GaoDepartment of Neurology, UCLA, Los Angeles, California, 90095.
Neema JamshidiDepartment of Radiology, The David Geffen School of Medicine at UCLA, Los Angeles, California, 90095.
Michael D KuoDepartment of Radiology, The David Geffen School of Medicine at UCLA, Los Angeles, California, 90095.
University of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dysregulated epithelial to mesenchymal transition (EMT) in cancer cells endows invasive and metastatic properties upon cancer cells that favor successful colonization of distal target organs and therefore play a critical role in transforming early-stage carcinomas into invasive malignancies. EMT has also been associated with tumor recurrence and drug resistance and cancer stem cell initiation. Therefore, better understanding of the mechanisms behind EMT could ultimately contribute to the development of novel prognostic approaches and individualized therapies that specifically target EMT processes. As an effort to characterize the central transcriptome changes during EMT, we have developed a Transforming growth factor (TGF)-beta-based in vitro EMT model and used it to profile EMT-related gene transcriptional changes in two different cell lines, a non-small cell lung cancer cell line H358, and a breast cell line MCF10a. After 7 days of TGF-beta/Oncostatin M (OSM) treatment, changes in cell morphology to a mesenchymal phenotype were observed as well as concordant EMT-associated changes in mRNA and protein expression. Further, increased motility was noted and flow cytometry confirmed enrichment in cancer stem cell-like populations. Microarray-based differential expression analysis identified an EMT-associated gene expression signature which was confirmed by RT-qPCR and which significantly overlapped with a previously published EMT core signature. Finally, two novel EMT-regulating transcription factors, IRF5 and LMCD1, were identified and independently validated.

Indexed as

TranscriptomeCarcinoma, Non-Small-Cell LungCell Line, TumorCo-Repressor ProteinsEpithelial-Mesenchymal TransitionGene Expression ProfilingGene Expression Regulation, NeoplasticGene Knockdown TechniquesHumansInterferon Regulatory FactorsLIM Domain ProteinsLung NeoplasmsReproducibility of ResultsRNA, MessengerRNA, Small InterferingSignal TransductionCo-Repressor ProteinsInterferon Regulatory FactorsIRF5 protein, humanLIM Domain ProteinsLMCD1 protein, humanRNA, MessengerRNA, Small InterferingTranscription FactorsTransforming Growth Factor betaBreastepithelial to mesenchymal transitiongenomics, transcription factornon-small-cell lung cancer

Identifiers

PMID27318801
PMCPMC4971924
OpenAlexW2423170580

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.