Evidence map›Paper›PMID 27318386›Full record

ArticleDevelopmental biology2017

Exploring the functions of nonclassical MHC class Ib genes in Xenopus laevis by the CRISPR/Cas9 system.

Maureen Banach, Eva-Stina Edholm, Jacques Robert

Abstract read
In one paragraph

Article in Developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
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  5. Article
  6. Review
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  11. Ttc30a affects tubulin modifications in a model for ciliary chondrodysplasia with polycystic kidney disease.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Review
  14. Frontiers in physiology · 2019
    Review
  15. Distinct MHC class I-like interacting invariant T cell lineage at the forefront of mycobacterial immunity uncovered inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Frog's DCs have it all in one.European journal of immunology · 2018
    Article
  17. Article
  18. Article
  19. A frog's view of EphrinB signaling.Genesis (New York, N.Y. : 2000) · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Maureen BanachDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, USA.
Eva-Stina EdholmDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, USA.
Jacques RobertDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, USA. Electronic address: Jacques_Robert@urmc.rochester.edu.

Funding

A Xenopus Laevis Research Resource for ImmunologyR24AI059830 · NIAID · UNIVERSITY OF ROCHESTER · PI JACQUES Robert · 2004 to 2026
$7.7M
The T32 Predoctoral Training Program in Immunology (PTPI)T32AI007285 · NIAID · UNIVERSITY OF ROCHESTER · PI Scott Andrew Gerber, JACQUES Robert · 1986 to 2026
$7.6M
The role of The Xenopus Nonclassical MHC class I molecule XNC10 in Tumor ImmunityF31CA192664 · NCI · UNIVERSITY OF ROCHESTER · PI BANACH, MAUREEN LUDMILA · 2015 to 2018
$153k
NCI NIH HHS F31 CA192664NIAID NIH HHS R24 AI059830NIAID NIH HHS T32 AI007285
6 · The paper itself

Abstract

A large family of highly related and clustered Xenopus nonclassical MHC class Ib (XNC) genes influences Xenopus laevis immunity and potentially other physiological functions. Using RNA interference (RNAi) technology, we previously demonstrated that one of XNC genes, XNC10.1, is critical for the development and function of a specialized innate T (iT) cell population. However, RNAi limitation such as a variable and unstable degree of gene silencing in F0 and F1 generations is hampering a thorough functional analysis of XNC10.1 and other XNC genes. To overcome this obstacle, we adapted the CRISPR/Cas9-mediated gene editing technique for XNC genes. We efficiently and specifically generated single gene knockouts of XNC10.1, XNC11, and XNC1 as well as double gene knockouts of XNC10.1 and XNC11 in X. laevis. In single XNC10.1 knockout X. laevis tadpoles, the absence of XNC10.1 and Vα6-Jα1.43 invariant T cell receptor rearrangement transcripts indicated XNC10.1 loss-of-function and deficiency in Vα6-Jα1.43 iT cells. Notably, targeting XNC10.1 did not affect neighboring XNC genes exhibiting high sequence similarity. Furthermore, XNC1 gene disruption induced mortality during developmental stage 47, suggesting some non-immune but essential function of this gene. These data demonstrate that the CRISPR/Cas9 system can be successfully adapted for genetic analysis in F0 generation of X. laevis.

Indexed as

CRISPR-Cas SystemsGenes, MHC Class IAnimalsAnimals, Inbred StrainsBase SequenceChromosome MappingEmbryo, NonmammalianGene Knockout TechniquesHistocompatibility Antigens Class ILarvaMicroinjectionsMultigene FamilyMutationProtein DomainsReverse GeneticsRNA, Guide, CRISPR-Cas SystemsHistocompatibility Antigens Class IRNA, Guide, CRISPR-Cas SystemsXenopus ProteinsAmphibiansComparative immunologyGene knockoutGenomicsReverse geneticXNC

Identifiers

PMID27318386
PMCPMC5501940

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.