Evidence map›Paper›PMID 27317781›Full record

ArticleG3 (Bethesda, Md.)2016

Genomic and Transcriptomic Associations Identify a New Insecticide Resistance Phenotype for the Selective Sweep at the Cyp6g1 Locus of Drosophila melanogaster.

Paul Battlay, Joshua M Schmidt, Alexandre Fournier-Level, Charles Robin

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Transposable elements and xenobiotic resistance.Frontiers in insect science · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The road less traveled: from genotype to phenotype in flies and humans.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  17. Review
  18. Article
  19. Article
  20. Does resistance really carry a fitness cost?Current opinion in insect science · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Paul BattlayThe Bio21 Institute and the School of Biosciences, The University of Melbourne, Parkville, Victoria 3010, Australia pbattlay@gmail.com.ORCID 0000-0001-6050-1868
Joshua M SchmidtThe Bio21 Institute and the School of Biosciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
Alexandre Fournier-LevelThe Bio21 Institute and the School of Biosciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
Charles RobinThe Bio21 Institute and the School of Biosciences, The University of Melbourne, Parkville, Victoria 3010, Australia.ORCID 0000-0002-7733-6763
University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Scans of the Drosophila melanogaster genome have identified organophosphate resistance loci among those with the most pronounced signature of positive selection. In this study, the molecular basis of resistance to the organophosphate insecticide azinphos-methyl was investigated using the Drosophila Genetic Reference Panel, and genome-wide association. Recently released full transcriptome data were used to extend the utility of the Drosophila Genetic Reference Panel resource beyond traditional genome-wide association studies to allow systems genetics analyses of phenotypes. We found that both genomic and transcriptomic associations independently identified Cyp6g1, a gene involved in resistance to DDT and neonicotinoid insecticides, as the top candidate for azinphos-methyl resistance. This was verified by transgenically overexpressing Cyp6g1 using natural regulatory elements from a resistant allele, resulting in a 6.5-fold increase in resistance. We also identified four novel candidate genes associated with azinphos-methyl resistance, all of which are involved in either regulation of fat storage, or nervous system development. In Cyp6g1, we find a demonstrable resistance locus, a verification that transcriptome data can be used to identify variants associated with insecticide resistance, and an overlap between peaks of a genome-wide association study, and a genome-wide selective sweep analysis.

Indexed as

AllelesAnimalsAnimals, Genetically ModifiedAzinphosmethylCytochrome P-450 Enzyme SystemDrosophila melanogasterDrosophila ProteinsGenome, InsectGenome-Wide Association StudyInsecticide ResistancePhenotypeTranscriptomeAzinphosmethylCyp6g1 protein, DrosophilaCytochrome P-450 Enzyme SystemDrosophila Proteinsazinphos-methylCyp6g1D. melanogasterDrosophila Genetic Reference Panelsystems genetics

Identifiers

PMID27317781
PMCPMC4978910
OpenAlexW2419848010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.