Evidence map›Paper›PMID 27317439›Full record

ArticleDiagnostic pathology2016

Molecular analysis in a GALNS study cohort of 15 Tunisian patients: description of a novel mutation.

Latifa Chkioua, Souhir Khedhiri, Hind Hafsi, Oussama Grissa, Hadhami Ben Turkia, Abdelhedi Miled, Sandrine Laradi, Roseline Froissart, Najat Alif

Open access · goldAbstract read
In one paragraph

Article in Diagnostic pathology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Genetics and genomic medicine in Tunisia.Molecular genetics & genomic medicine · 2018
    Article
  3. Epidemiology of mucopolysaccharidoses.Molecular genetics and metabolism · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Latifa ChkiouaLaboratory of Biochemistry, F. Hached Hospital, 4000, Sousse, Tunisia.
Souhir KhedhiriLaboratory of Biochemistry, F. Hached Hospital, 4000, Sousse, Tunisia.
Hind HafsiTargeted Therapy Team, The Institute of Cancer Research, London, United Kingdom.
Oussama GrissaLaboratory of Biochemistry, F. Hached Hospital, 4000, Sousse, Tunisia.
Hadhami Ben TurkiaLaboratory of pediatrics, La Rabta Hospital, 1007, Tunis, Tunisia.
Abdelhedi MiledLaboratory of Biochemistry, F. Hached Hospital, 4000, Sousse, Tunisia.
Sandrine LaradiThe Auvergne-Loire Regional Branch of the French National Blood System EFS/GIMAP-EA 3064, 42100, Saint Etienne, France.
Roseline FroissartHereditary Metabolic Diseases Service. Center for biology and pathology, Est Hospices Civils, Lyon, 69677, Bron cedex, France.
Najat AlifDepartment of Biology, Laboratory of Biotechnologies and Valorization of Natural Resources. IBN Zohr University, School of Sciences, BP 8106, Agadir, Morocco. n.alif@uiz.ac.ma.
Hôpital Farhat Hached · TNHôpital La Rabta · TNHospices Civils de Lyon · FRInstitute of Cancer Research · GBUniversité Ibn Zohr · MAUniversity of Monastir · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMucopolysaccharidosis type IVA (MPS IVA) is an autosomal recessive disease caused by the deficiency of the lysosomal enzyme N-acetylgalactosamine-6-sulfate sulfatase (GALNS). The purpose of this study was to analyze the GALNS mutations and the haplotypes associated.

methodsMutation screening of the GALNS gene was performed by direct sequence analysis using DNA samples from 15 unrelated Tunisian MPS IVA patients. We also analyzed the haplotypes associated with the novel mutation and with the other reported GALNS mutations.

resultsWe have identified an unreported missense mutation p.D288G (c.863A > G) in one patient, the most frequently c.120 + 1G > A (IVS1 + 1G > A) mutation in eleven MPS IVA patients and three previously reported mutations p.G66R, p.A85T and p.R386C on the other MPS IVA patients. All the studied patients were homozygous for these identified mutations. Bioinformatics analysis predicted the novel mutation as being probably pathogenic. These findings with the unobserved p.D288G mutation in controls subjects, suggested that it is a disease-causing mutation, which was correlated with the severe phenotype observed in the patients. We have found that the two GALNS unreported and reported mutations, respectively p.D288G and p.R386C, were associated with a common and specific haplotype.

conclusionOur results were in agreement with previous reports from Tunisia, suggesting, on one hand the genotype/phenotype correlations in MPS IVA patients and the other hand the haplotype analyses were useful for determination of mutation origin in Tunisian population.

Indexed as

Genetic Association StudiesAmino Acid SequenceChild, PreschoolChondroitinsulfatasesCohort StudiesComputational BiologyDNA Mutational AnalysisFemaleGenotypeHaplotypesHomozygoteHumansInfantMaleMucopolysaccharidosis IVMutationChondroitinsulfatasesGALNS protein, humanBioinformatics analysisHaplotypesMucopolysaccharidosis type IVAMutation screeningN-acetylgalactosamine-6-sulfatase

Identifiers

PMID27317439
PMCPMC4912732
OpenAlexW2426142197

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.