Evidence map›Paper›PMID 27316467›Full record

ArticleBMC cancer2016

A comparison of 12-gene colon cancer assay gene expression in African American and Caucasian patients with stage II colon cancer.

Rangaswamy Govindarajan, James Posey, Calvin Y Chao, Ruixiao Lu, Trafina Jadhav, Ahmed Y Javed, Awais Javed, Fade A Mahmoud, Raymond U Osarogiagbon, Upender Manne

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 15 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Rangaswamy GovindarajanUniversity of Arkansas for Medical Sciences, 4301 W Markham, Slot 508, Little Rock, AR, 72205, USA. govindarajanrang@uams.edu.
James PoseyUniversity of Alabama at Birmingham Comprehensive Cancer Center, Birmingham, AL, USA.
Calvin Y ChaoGenomic Health Inc., Redwood City, CA; Genomic Health, Inc., Redwood City, CA, USA.
Ruixiao LuGenomic Health Inc., Redwood City, CA; Genomic Health, Inc., Redwood City, CA, USA.
Trafina JadhavUniversity of Alabama at Birmingham Comprehensive Cancer Center, Birmingham, AL, USA.
Ahmed Y JavedBoston Baskin Cancer Foundation, Baptist Cancer Center, Memphis, TN, USA.
Awais JavedBoston Baskin Cancer Foundation, Baptist Cancer Center, Memphis, TN, USA.
Fade A MahmoudUniversity of Arkansas for Medical Sciences, 4301 W Markham, Slot 508, Little Rock, AR, 72205, USA.
Raymond U OsarogiagbonBoston Baskin Cancer Foundation, Baptist Cancer Center, Memphis, TN, USA.
Upender ManneUniversity of Alabama at Birmingham Comprehensive Cancer Center, Birmingham, AL, USA. upendermanne@uabmc.edu.
Skin Cancer Foundation · USUniversity of Alabama at Birmingham · USGenomic Health (United States) · USUniversity of Arkansas for Medical Sciences · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
NCI NIH HHS P30 CA013148
6 · The paper itself

Abstract

backgroundAfrican American (AA) colon cancer patients have a worse prognosis than Caucasian (CA) colon cancer patients, however, reasons for this disparity are not well understood. To determine if tumor biology might contribute to differential prognosis, we measured recurrence risk and gene expression using the Oncotype DX® Colon Cancer Assay (12-gene assay) and compared the Recurrence Score results and gene expression profiles between AA patients and CA patients with stage II colon cancer.

methodsWe retrieved demographic, clinical, and archived tumor tissues from stage II colon cancer patients at four institutions. The 12-gene assay and mismatch repair (MMR) status were performed by Genomic Health (Redwood City, California). Student's t-test and the Wilcoxon rank sum test were used to compare Recurrence Score data and gene expression data from AA and CA patients (SAS Enterprise Guide 5.1).

resultsSamples from 122 AA and 122 CA patients were analyzed. There were 118 women (63 AA, 55 CA) and 126 men (59 AA, 67 CA). Median age was 66 years for AA patients and 68 for CA patients. Age, gender, year of surgery, pathologic T-stage, tumor location, the number of lymph nodes examined, lymphovascular invasion, and MMR status were not significantly different between groups (p = 0.93). The mean Recurrence Score result for AA patients (27.9 ± 12.8) and CA patients (28.1 ± 11.8) was not significantly different and the proportions of patients with high Recurrence Score values (≥41) were similar between the groups (17/122 AA; 15/122 CA). None of the gene expression variables, either single genes or gene groups (cell cycle group, stromal group, BGN1, FAP, INHBA1, Ki67, MYBL2, cMYC and GADD45B), was significantly different between the racial groups. After controlling for clinical and pathologic covariates, the means and distributions of Recurrence Score results and gene expression profiles showed no statistically significant difference between patient groups.

conclusionThe distribution of Recurrence Score results and gene expression data was similar in a cohort of AA and CA patients with stage II colon cancer and similar clinical characteristics, suggesting that tumor biology, as represented by the 12-gene assay, did not differ between patient groups.

Indexed as

Gene Regulatory NetworksAdultAgedAged, 80 and overBlack or African AmericanColonic NeoplasmsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedUnited StatesWhite People12-gene assayAfrican-AmericanCaucasianColon cancerGene expressionStage II

Identifiers

PMID27316467
PMCPMC4912774
OpenAlexW2426599974

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.