Evidence map›Paper›PMID 27316462›Full record

ReviewDNA repair2016

The emerging role of deubiquitination in nucleotide excision repair.

Ling Zhang, Feng Gong

Abstract readReview
In one paragraph

Review in DNA repair, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ling ZhangDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, United States.
Feng GongDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, United States. Electronic address: fgong@med.miami.edu.
University of Miami · US

Funding

SWI/SNF chromatin remodeling in nucleotide excision repairR01ES017784 · NIEHS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GONG, FENG · 2010 to 2014
$1.7M
Novel deubiquitinating activities targeting DNA damage recognition in NERR21ES024882 · NIEHS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GONG, FENG · 2015 to 2016
$422k
NIEHS NIH HHS R01 ES017784NIEHS NIH HHS R21 ES024882
6 · The paper itself

Abstract

Nucleotide excision repair (NER) protects genome stability by eliminating DNA helix distorting lesions, such as those induced by UV radiation. The addition and removal of ubiquitin, namely, ubiquitination and deubiquitination, have recently been demonstrated as general mechanisms to regulate protein functions. Accumulating evidence shows that several NER factors are subjected to extensive regulation by ubiquitination and deubiquitination. Thus, the balance between E3 ligases and deubiquitinating enzyme activities can dynamically alter the ubiquitin landscape at DNA damage sites, thereby regulating NER efficiency. Current knowledge about XPC ubiquitination by different ubiquitin E3 ligases highlights the importance of ubiquitin linkage types in regulating XPC binding and release from damaged DNA. Here, we discuss the emerging roles of deubiquitinating enzymes and their ubiquitin linkage specificities in NER.

Indexed as

DNA RepairProtein Processing, Post-TranslationalChromatinDNADNA-Binding ProteinsDNA DamageGenome, HumanHumansIsoenzymesNuclear ProteinsProtein BindingUbiquitinUbiquitinationUbiquitin-Protein LigasesUbiquitin ThiolesteraseUltraviolet RaysChromatinDNADNA-Binding ProteinsIsoenzymesNuclear ProteinsRNF111 protein, humanUbiquitinUbiquitin-Protein LigasesUbiquitin ThiolesteraseXPC protein, humanDeubiquitinationDUBsE3 ubiquitin ligaseGG-NERSegregaseTC-NERUbiquitinationUbiquitin linkage specificity

Identifiers

PMID27316462
PMCPMC4958509
OpenAlexW2396271475

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.