Evidence map›Paper›PMID 27315434›Full record

ReviewCurrent opinion in microbiology2016

Gene silencing and sex determination by programmed DNA elimination in parasitic nematodes.

Adrian Streit, Jianbin Wang, Yuanyuan Kang, Richard E Davis

Abstract readReview
In one paragraph

Review in Current opinion in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Nematode chromosomes.Genetics · 2022
    Review
  17. Delete and survive: strategies of programmed genetic material elimination in eukaryotes.Biological reviews of the Cambridge Philosophical Society · 2022
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Adrian StreitDepartment Evolutionary Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany.
Jianbin WangDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, United States.
Yuanyuan KangDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, United States.
Richard E DavisDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, United States. Electronic address: richard.davis@ucdenver.edu.

Funding

IN VIVO ANALYSIS OF SL ADDITION IN ASCARIS EMBRYOSR01AI049558 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAVIS, RICHARD E. · 2000 to 2015
$4.8M
Chromatin diminution in nematodesR01AI114054 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAVIS, RICHARD E. · 2015 to 2019
$2.5M
NIAID NIH HHS R01 AI049558NIAID NIH HHS R01 AI114054
6 · The paper itself

Abstract

Maintenance of genome integrity is essential. However, programmed DNA elimination removes specific DNA sequences from the genome during development. DNA elimination occurs in unicellular ciliates and diverse metazoa ranging from nematodes to vertebrates. Two distinct groups of nematodes use DNA elimination to silence germline-expressed genes in the soma (ascarids) or for sex determination (Strongyloides spp.). Data suggest that DNA elimination likely evolved independently in these nematodes. Recent studies indicate that differential CENP-A deposition within chromosomes defines which sequences are retained and lost during Ascaris DNA elimination. Additional studies are needed to determine the distribution, functions, and mechanisms of DNA elimination in nematodes.

Indexed as

AnimalsAscarisBase SequenceCentromere Protein ADNA, ProtozoanFemaleGene SilencingMaleSequence DeletionSex Determination ProcessesStrongyloidesCentromere Protein ADNA, Protozoan

Identifiers

PMID27315434
PMCPMC4983467

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.