Evidence map›Paper›PMID 27314919›Full record

ArticleAnalytical chemistry2016

Programmable, Pneumatically Actuated Microfluidic Device with an Integrated Nanochannel Array To Track Development of Individual Bacteria.

Joshua D Baker, David T Kysela, Jinsheng Zhou, Seth M Madren, Andrew S Wilkens, Yves V Brun, Stephen C Jacobson

Abstract read
In one paragraph

Article in Analytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The Division Defect of aJournal of bacteriology · 2021
    Article
  5. Article
  6. Article
  7. Single-cell Microfluidic Analysis of Bacillus subtilis.Journal of visualized experiments : JoVE · 2018
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Joshua D BakerDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.
David T KyselaDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.
Jinsheng ZhouDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.
Seth M MadrenDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.
Andrew S WilkensDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.
Yves V BrunDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.
Stephen C JacobsonDepartment of Chemistry and ‡Department of Biology, Indiana University , Bloomington, Indiana 47405, United States.

Funding

GLOBAL CONTROL OF DIFFERENTIATION IN CAULOBACTERR01GM051986 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V · 1995 to 2016
$6.0M
Dynamics of bacterial peptidoglycan synthesisR01GM113172 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BRUN, YVES V, VANNIEUWENHZE, MICHAEL S · 2015 to 2018
$3.5M
Microfluidic Devices for Studying the Development and Aging of BacteriaR01GM113121 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI JACOBSON, STEPHEN C · 2016 to 2019
$1.1M
NIGMS NIH HHS R01 GM051986NIGMS NIH HHS R01 GM113121NIGMS NIH HHS R01 GM113172
6 · The paper itself

Abstract

We describe a microfluidic device with an integrated nanochannel array to trap individual bacteria and monitor growth and reproduction of lineages over multiple generations. Our poly(dimethylsiloxane) device comprises a pneumatically actuated nanochannel array that includes 1280 channels with widths from 600 to 1000 nm to actively trap diverse bacteria. Integrated pumps and valves perform on-chip fluid and cell manipulations that provide dynamic control of cell loading and nutrient flow, permitting chemostatic growth for extended periods of time (typically 12 to 20 h). Nanochannels confine bacterial growth to a single dimension, facilitating high-resolution, time-lapse imaging and tracking of individual cells. We use the device to monitor the growth of single bacterial cells that undergo symmetric (Bacillus subtilis) and asymmetric (Caulobacter crescentus) division and reconstruct their lineages to correlate growth measurements through time and among related cells. Furthermore, we monitor the motility state of single B. subtilis cells across multiple generations by the expression of a fluorescent reporter protein and observe that the state of the epigenetic switch is correlated over five generations. Our device allows imaging of cellular lineages with high spatiotemporal resolution to facilitate the analysis of biological processes spanning multiple generations.

Indexed as

Microfluidic Analytical TechniquesNanotechnologyBacillus subtilisCaulobacter crescentusDimethylpolysiloxanesbaysilonDimethylpolysiloxanes

Identifiers

PMID27314919
PMCPMC5073376

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.