Evidence map›Paper›PMID 27314642›Full record

ArticleAnalytical chemistry2016

Profiling Reactive Metabolites via Chemical Trapping and Targeted Mass Spectrometry.

Jae Won Chang, Gihoon Lee, John S Coukos, Raymond E Moellering

Abstract readLetter
In one paragraph

Article in Analytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Glyceraldehyde-3-phosphate dehydrogenase homologs as bifunctional gatekeepers of metabolic segregation inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
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  9. Article
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  12. Chemoproteomic Profiling of Phosphoaspartate Modifications in Prokaryotes.Angewandte Chemie (International ed. in English) · 2018
    Article
  13. Article
  14. Article
  15. Co-opting a Bioorthogonal Reaction for Oncometabolite Detection.Journal of the American Chemical Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jae Won ChangDepartment of Chemistry and ‡Institute for Genomics and Systems Biology, University of Chicago , 929 East 57th Street, Chicago, Illinois 60637, United States.
Gihoon LeeDepartment of Chemistry and ‡Institute for Genomics and Systems Biology, University of Chicago , 929 East 57th Street, Chicago, Illinois 60637, United States.
John S CoukosDepartment of Chemistry and ‡Institute for Genomics and Systems Biology, University of Chicago , 929 East 57th Street, Chicago, Illinois 60637, United States.
Raymond E MoelleringDepartment of Chemistry and ‡Institute for Genomics and Systems Biology, University of Chicago , 929 East 57th Street, Chicago, Illinois 60637, United States.

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Distribution, regulation and function of a novel lysine PTM in metabolic diseaseR00CA175399 · NCI · UNIVERSITY OF CHICAGO · PI MOELLERING, RAYMOND E · 2015 to 2017
$712k
NCI NIH HHS R00 CA175399NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Metabolomic profiling studies aim to provide a comprehensive, quantitative, and dynamic portrait of the endogenous metabolites in a biological system. While contemporary technologies permit routine profiling of many metabolites, intrinsically labile metabolites are often improperly measured or omitted from studies due to unwanted chemical transformations that occur during sample preparation or mass spectrometric analysis. The primary glycolytic metabolite 1,3-bisphosphoglyceric acid (1,3-BPG) typifies this class of metabolites, and, despite its central position in metabolism, has largely eluded analysis in profiling studies. Here we take advantage of the reactive acylphosphate group in 1,3-BPG to chemically trap the metabolite with hydroxylamine during metabolite isolation, enabling quantitative analysis by targeted LC-MS/MS. This approach is compatible with complex cellular metabolome, permits specific detection of the reactive (1,3-) instead of nonreactive (2,3-) BPG isomer, and has enabled direct analysis of dynamic 1,3-BPG levels resulting from perturbations to glucose processing. These studies confirmed that standard metabolomic methods misrepresent cellular 1,3-BPG levels in response to altered glucose metabolism and underscore the potential for chemical trapping to be used for other classes of reactive metabolites.

Indexed as

MetabolomeTandem Mass SpectrometryCell Line, TumorChromatography, High Pressure LiquidDiphosphoglyceric AcidsGlucoseHumansHydroxylamineIsomerismDiphosphoglyceric AcidsGlucoseglycerate 1,3-biphosphateHydroxylamine

Identifiers

PMID27314642
PMCPMC4998964

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.