Evidence map›Paper›PMID 27314380›Full record

ArticleViruses2016

In Vitro Synthesized RNA Generated from cDNA Clones of Both Genomic Components of Cucurbit yellow stunting disorder virus Replicates in Cucumber Protoplasts.

Carolyn A Owen, Romy Moukarzel, Xiao Huang, Mona A Kassem, Eleonora Eliasco, Miguel A Aranda, Robert H A Coutts, Ioannis C Livieratos

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. The P1 Protein ofFrontiers in microbiology · 2021
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Carolyn A OwenDepartment of Sustainable Agriculture, Mediterranean Agronomic Institute of Chania, Alsylio Agrokepio, Chania GR-73100, Greece. owen@maich.gr.
Romy MoukarzelDepartment of Sustainable Agriculture, Mediterranean Agronomic Institute of Chania, Alsylio Agrokepio, Chania GR-73100, Greece. moukarzel.romy@gmail.com.
Xiao HuangSir Alexander Fleming Building, Department of Biological Sciences, Imperial College, London SW7 2AZ, UK. huang.xiao@gmail.com.
Mona A KassemDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura (CEBAS)-CSIC, P.O. Box 164, 30100 Espinardo, Murcia, Spain. mona_kassem@yahoo.com.
Eleonora EliascoSir Alexander Fleming Building, Department of Biological Sciences, Imperial College, London SW7 2AZ, UK. eeliasco@hotmail.com.
Miguel A ArandaDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura (CEBAS)-CSIC, P.O. Box 164, 30100 Espinardo, Murcia, Spain. m.aranda@cebas.csic.es.
Robert H A CouttsDepartment of Biological and Environmental Sciences, School of Life and Medical Sciences, University of Hertfordshire, College Lane, Hatfield, Hertfordshire AL10 9AB, UK. r.coutts@herts.ac.uk.
Ioannis C LivieratosDepartment of Sustainable Agriculture, Mediterranean Agronomic Institute of Chania, Alsylio Agrokepio, Chania GR-73100, Greece. livieratos@maich.gr.
Mediterranean Agronomic Institute of Chania · GRCentro de Edafología y Biología Aplicada del Segura · ESImperial College London · GBUniversity of Hertfordshire · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cucurbit yellow stunting disorder virus (CYSDV), a bipartite whitefly-transmitted virus, constitutes a major threat to commercial cucurbit production worldwide. Here, construction of full-length CYSDV RNA1 and RNA2 cDNA clones allowed the in vitro synthesis of RNA transcripts able to replicate in cucumber protoplasts. CYSDV RNA1 proved competent for replication; transcription of both polarities of the genomic RNA was detectable 24 h post inoculation. Hybridization of total RNA extracted from transfected protoplasts or from naturally CYSDV-infected cucurbits revealed high-level transcription of the p22 subgenomic RNA species. Replication of CYSDV RNA2 following co-transfection with RNA1 was also observed, with similar transcription kinetics. A CYSDV RNA2 cDNA clone (T3CM8Δ) comprising the 5'- and 3'-UTRs plus the 3'-terminal gene, generated a 2.8 kb RNA able to replicate to high levels in protoplasts in the presence of CYSDV RNA1. The clone T3CM8Δ will facilitate reverse genetics studies of CYSDV gene function and RNA replication determinants.

Indexed as

DNA, ComplementaryVirus ReplicationCrinivirusCucumis sativusProtoplastsRNA, ViralTranscription, GeneticTransfectionDNA, ComplementaryRNA, ViralcrinivirusesCucurbit yellow stunting disorder virusinfectious clonesprotoplastswhitefly-transmitted viruses

Identifiers

PMID27314380
PMCPMC4926190
OpenAlexW2431653390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.