Evidence map›Paper›PMID 27314298›Full record

ArticleCancer biomarkers : section A of Disease markers2016

Polymorphisms in selected DNA repair genes and cell cycle regulating genes involved in the risk of papillary thyroid carcinoma.

Tereza Halkova, Sarka Dvorakova, Vlasta Sykorova, Eliska Vaclavikova, Josef Vcelak, Petr Vlcek, Pavla Sykorova, Daniela Kodetova, Jan Betka, Petr Lastuvka and 4 more

Abstract read
In one paragraph

Article in Cancer biomarkers : section A of Disease markers, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 3 pooled it
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 3 syntheses or guidelines pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. XRCC1 Arg194Trp polymorphism and thyroid cancer.Journal of endocrinological investigation · 2020
    Pooled it
  3. Pooled it
  4. Article
  5. Polymorphisms of DNA Repair Genes in Thyroid Cancer.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Tereza HalkovaDepartment of Molecular Endocrinology, Institute of Endocrinology, Prague, Czech Republic.
Sarka DvorakovaDepartment of Molecular Endocrinology, Institute of Endocrinology, Prague, Czech Republic.
Vlasta SykorovaDepartment of Molecular Endocrinology, Institute of Endocrinology, Prague, Czech Republic.
Eliska VaclavikovaDepartment of Molecular Endocrinology, Institute of Endocrinology, Prague, Czech Republic.
Josef VcelakDepartment of Molecular Endocrinology, Institute of Endocrinology, Prague, Czech Republic.
Petr VlcekDepartment of Nuclear Medicine and Endocrinology, 2nd Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Pavla SykorovaDepartment of Nuclear Medicine and Endocrinology, 2nd Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Daniela KodetovaDepartment of Pathology and Molecular Medicine, 2nd Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Jan BetkaDepartment of Otorhinolaryngology and Head and Neck Surgery, 1st Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Petr LastuvkaDepartment of Otorhinolaryngology and Head and Neck Surgery, 1st Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Petr BavorDepartment of Surgery, 2nd Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Jiri HochDepartment of Surgery, 2nd Faculty of Medicine, Charles University and Faculty Hospital Motol, Prague, Czech Republic.
Rami KatraDepartment of ENT, 2nd Faculty of Medicine, Charles University in Prague and Motol University Hospital, Prague, Czech Republic.
Bela BendlovaDepartment of Molecular Endocrinology, Institute of Endocrinology, Prague, Czech Republic.
Charles University · CZInstitute of Endocrinology · CZUniversity Hospital in Motol · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPapillary thyroid carcinoma (PTC) is the most common type of thyroid cancer. In addition to causal somatic mutations in the BRAF gene and RET/PTC rearrangements, the contribution of single nucleotide polymorphisms (SNPs) in low-penetrance genes in the development of PTC has been proposed.

methodsFour SNPs in the XRCC1 (Arg399Gln, Arg280His, Arg194Trp and T-77C) and one SNP from each of three other genes participating in DNA repair pathways and/or cell cycle regulation (ATM Asp1853Asn, TP53 Arg72Pro, CDKN1B Val109Gly) were selected. The allelic and genotypic distributions of these variants as well as haplotypes of the XRCC1 were examined in 583 individuals comprising well-characterized cohorts of 209 PTC patients and 374 healthy volunteers. Correlations of polymorphism with clinical-pathological data and mutation status were performed.

resultsXRCC1 T-77C polymorphism affects the genetic susceptibility for PTC development in men, the specific combination of XRCC1 haplotypes correlates with RET/PTC incidence, CDKN1B Val109Gly significantly influences the risk of developing PTC regardless of gender and in PTC cases, selected genotypes of TP53 Arg72Pro and ATM Asp1853Asn were significantly associated with monitored tumour characteristics.

conclusionIt seems that SNPs in studied regulating genes contribute to the development of PTC and modify the tumour behaviour or characteristics.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAllelesCarcinomaCarcinoma, PapillaryCase-Control StudiesCell CycleDNA RepairFemaleGene FrequencyGenotypeHaplotypesHumansMaleMiddle Agedcell cycle regulatorDNA repairmolecular geneticsPapillary thyroid cancerSNP

Identifiers

PMID27314298
PMCPMC13020473
OpenAlexW2430438831

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.