Evidence map›Paper›PMID 27313590›Full record

ArticleFrontiers in plant science2016

Expect the Unexpected Enrichment of "Hidden Proteome" of Seeds and Tubers by Depletion of Storage Proteins.

Ravi Gupta, Cheol W Min, Yiming Wang, Yong C Kim, Ganesh K Agrawal, Randeep Rakwal, Sun T Kim

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 4 countries.

Ravi GuptaDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University Miryang, South Korea.
Cheol W MinDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University Miryang, South Korea.
Yiming WangDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research Cologne, Germany.
Yong C KimDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University Miryang, South Korea.
Ganesh K AgrawalResearch Laboratory for Biotechnology and BiochemistryKathmandu, Nepal; Global Research Arch for Developing Education, Academy Pvt. Ltd.Birgunj, Nepal.
Randeep RakwalGlobal Research Arch for Developing Education, Academy Pvt. Ltd.Birgunj, Nepal; Faculty of Health and Sport Sciences and Tsukuba International Academy for Sport Studies, University of TsukubaIbaraki, Japan.
Sun T KimDepartment of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University Miryang, South Korea.
Pusan National University · KRMax Planck Institute for Plant Breeding Research · DENepal Academy of Science and Technology · NPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dynamic resolution of seed and tuber protein samples is highly limited due to the presence of high-abundance storage proteins (SPs). These proteins inevitably obscure the low-abundance proteins (LAPs) impeding their identification and characterization. To facilitate the detection of LAPs, several methods have been developed during the past decade, enriching the proteome with extreme proteins. Most of these methods, if not all, are based on the specific removal of SPs which ultimately magnify the proteome coverage. In this mini-review, we summarize the available methods that have been developed over the years for the enrichment of LAPs either from seeds or tubers. Incorporation of these methods during the protein extraction step will be helpful in understanding the seed/tuber biology in greater detail.

Indexed as

depletion methodshidden proteomehigh-abundance proteinslow-abundance proteinsplantproteome coveragestorage proteins

Identifiers

PMID27313590
PMCPMC4887479
OpenAlexW2417232939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.