Evidence map›Paper›PMID 27313204›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Elongation factor G initiates translocation through a power stroke.

Chunlai Chen, Xiaonan Cui, John F Beausang, Haibo Zhang, Ian Farrell, Barry S Cooperman, Yale E Goldman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Article
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  6. Article
  7. Partial spontaneous intersubunit rotations in pretranslocation ribosomes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Article
  10. Detection of immunoreactive proteins ofFrontiers in cellular and infection microbiology · 2023
    Article
  11. Article
  12. The role of GTP hydrolysis by EF-G in ribosomal translocation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Ribosome as a Translocase and Helicase.Biochemistry. Biokhimiia · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Chunlai ChenDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6085; Pennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6083;
Xiaonan CuiDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6085; Pennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6083;
John F BeausangDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6085; Pennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6083;
Haibo ZhangDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-6323;
Ian FarrellAnima Cell Metrology, Inc., Bernardsville, NJ 07924-2270.
Barry S CoopermanDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-6323; goldmany@mail.med.upenn.edu cooprman@pobox.upenn.edu.
Yale E GoldmanDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6085; Pennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6083; goldmany@mail.med.upenn.edu cooprman@pobox.upenn.edu.
University of Pennsylvania · US

Funding

Supplemental Application linked to parent grant Structural Dynamics of Molecular Motors, the Cytoskeleton, and the RibosomeR35GM118139 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI YALE E GOLDMAN · 2016 to 2026
$8.3M
Single Molecule Dynamics of mRNA TranslationR01GM080376 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI COOPERMAN, BARRY S., GOLDMAN, YALE E · 2008 to 2016
$2.5M
NIGMS NIH HHS R01 GM080376NIGMS NIH HHS R35 GM118139
6 · The paper itself

Abstract

During the translocation step of prokaryotic protein synthesis, elongation factor G (EF-G), a guanosine triphosphatase (GTPase), binds to the ribosomal PRE-translocation (PRE) complex and facilitates movement of transfer RNAs (tRNAs) and messenger RNA (mRNA) by one codon. Energy liberated by EF-G's GTPase activity is necessary for EF-G to catalyze rapid and precise translocation. Whether this energy is used mainly to drive movements of the tRNAs and mRNA or to foster EF-G dissociation from the ribosome after translocation has been a long-lasting debate. Free EF-G, not bound to the ribosome, adopts quite different structures in its GTP and GDP forms. Structures of EF-G on the ribosome have been visualized at various intermediate steps along the translocation pathway, using antibiotics and nonhydolyzable GTP analogs to block translocation and to prolong the dwell time of EF-G on the ribosome. However, the structural dynamics of EF-G bound to the ribosome have not yet been described during normal, uninhibited translocation. Here, we report the rotational motions of EF-G domains during normal translocation detected by single-molecule polarized total internal reflection fluorescence (polTIRF) microscopy. Our study shows that EF-G has a small (∼10°) global rotational motion relative to the ribosome after GTP hydrolysis that exerts a force to unlock the ribosome. This is followed by a larger rotation within domain III of EF-G before its dissociation from the ribosome.

Indexed as

Amino Acid SequenceGuanosine TriphosphateMolecular Sequence DataPeptide Elongation Factor GProtein Translocation SystemsRibosomesGuanosine TriphosphatePeptide Elongation Factor GProtein Translocation Systemsenergy landscapepolarized TIRFribosomerotational motiontranslocation

Identifiers

PMID27313204
PMCPMC4941437
OpenAlexW2425004119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.